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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTGCACTTGGGGCTGCAAAGGGTTTAGCTTTCCTCCATGAAGCGGAGAAACCTGTTATATATCGAGATTTTAAGGCTTCAAACATCTTGTTGGACTCTgtaagcttctgctccccccttgtttgagagtactttcagcattgttgttggctttctttgtgatcaatgaccttatggtgatactattttcag

Basic information

species Vitis vinifera
transcript Vv11s0016g01060.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g01060.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G05660.1 (Glycine max), 5'ss of exon 3
AATTGCACTTGGGGCTGCAAAGGGTTTAGCTTTCCTCCATGAAGCGGAGAAACCTGTTATATATCGAGATTTTAAGGCTTCAAACATCTTGTTGGACTCTgtaag----cttctgctccccccttgtttgagagtactttca-----gcattgtt--gttggcttt-ctttgtgatcaatgaccttatggtgatactattttcag------------
|||||||  ||| |||||||||||| |||| || || ||||||||  ||||||| || || ||| |||||||||| ||||||||||||||||| ||||| |||||    |   | ||   | |||  |      |||| | |     |||  |||  |     ||  ||   | || ||| |  ||||      ||| |||| |             
AATTGCAGCTGGAGCTGCAAAGGGTCTAGCCTTTCTACATGAAGCAAAGAAACCAGTCATCTATAGAGATTTTAAAGCTTCAAACATCTTGTTAGACTCGgtaagtaatcaattactagtcactttctctgacatactctaattaatgcaccgtttggacaatttcactccttaattaatcaa-ttattaactcactctttttaattattcttccag

upper sequence: Vv11s0016g01060.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G17050.1 (Glycine max), 5'ss of exon 3
AATTGCACTTGGGGCTGCAAAGGGTTTAGCTTTCCTCCATGAAGCGGAGAAACCTGTTATATATCGAGATTTTAAGGCTTCAAACATCTTGTTGGACTCTgt----aagcttctgctccccccttgtttgagagtactttcagcattgtt--gttgg--ctttctttgtgatcaatgaccttatggtgatactattttcag------------
|||||||  ||| |||||||||||| |||| || || ||||||||| | ||||| || || ||| ||||||| || ||||||||||||||||| ||||| ||    || |   | ||   | |||  |   |  |||| | |  | || |  ||| |  |  | |   |    ||| |  || |      ||| | ||||             
AATTGCAGCTGGAGCTGCAAAGGGTCTAGCCTTTCTACATGAAGCGAAAAAACCAGTCATCTATAGAGATTTCAAAGCTTCAAACATCTTGTTAGACTCGgtgaataatcaattactagtcactttctctggcatactctaattaatgctccgtttgaacaatttcattccgtaatcaatttttaact-cactctcttcattcattcttccag

upper sequence: Vv11s0016g01060.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G19600.1 (Glycine max), 5'ss of exon 3
AATTGCACTTGGGGCTGCAAAGGGTTTAGCTTTCCTCCATGAAGCGGAGAAACCTGTTATATATCGAGATTTTAAGGCTTCAAACATCTTGTTGGACTCTgtaagcttctgctccccccttgtttgagagtactttcag---cattgttgttggctttcttt-gtgatcaatgac-cttatggtgatactattttcag--
||||||  |||| ||||| ||||||||||| || || |||||||| ||||| || || || ||| ||||||| || ||||| ||||||||||| | |||||||||  ||   | |  |||  |||     | | || |      || || |    | | | | |   |  || || | |||    ||    || |  |  
AATTGCTGTTGGAGCTGCGAAGGGTTTAGCATTTCTTCATGAAGCTGAGAAGCCAGTCATCTATAGAGATTTCAAAGCTTCCAACATCTTGTTAGGCTCTgtaagtctcactttcatcctcctttactgttccattaaaatctctttttctcaattatatgtagaagttcataacacctatctatatgtgtttatttgat

upper sequence: Vv11s0016g01060.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G08110.1 (Glycine max), 5'ss of exon 3
AATTGCACTTGGGGCTGCAAAGGGTTTAGCTTTCCTCCATGAAGCGGAGAAACCTGTTATATATCGAGATTTTAAGGCTTCAAACATCTTGTTGGACTCTgtaag-----------cttctgctccccccttgtttgagagtactttcagcattgttgt-tggctttctttgtgatcaatgaccttatggtgatactattttcag
||||||  |||| ||||| |||||  |||| || || ||||| || ||||| || || || ||| ||||||| || ||||| ||||||||||| |||||||||||           ||||| ||   || |||| |        |   | ||   || | |   | |   | ||||  |  | |||||   ||   ||       
AATTGCTGTTGGAGCTGCGAAGGGCCTAGCCTTTCTTCATGAGGCTGAGAAGCCAGTCATCTATAGAGATTTCAAAGCTTCCAACATCTTGTTAGACTCTgtaagtgtcacttttacttctactgttccattgtatagagaagttcatatcacctttctatatgtgttcatttgatttaacatcttataaggagtgtaaa-----