1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TGTGGGTAATATCCACCCACAGGTTACAGAACCACTTCTTCAAGAGGTTTTCTCTAGTACTGGTCCCCTCGAAGGGTGCAAGCTCATTAGGAAAGAGAAGgtcagttttcattttgccgatttcagaaatcatctttttgatggataagcaatgaccagtcatgccatatactatatgatcataatagcatctgatggtt...
species | Vitis vinifera |
transcript | Vv11s0016g00700.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TCTCTAGTACTGGTCCCCTCGAAGGGTGCAAGCTCATTAGGAAAGAGAAG TCATCCTATGGTTTTGTCGATTACTTTGACCGGAGATCTGCTGCCCTTTCTEST: gi|110728255|gb|EE103663.1|EE103663
genomic: TCTCTAGTACTGGTCCCCTCGAAGGGTGCAAGCTCATTAGGAAAGAGAAGgtcagttttc ... tcatatgcagTCATCCTATGGTTTTGTCGATTACTTTGACCGGAGATCTGCTGCCCTTTCT
EST: TCTCTAGTACTGGTCCCCTCGAAGGGTGCAAGCTCATTAGGAAAGAGAAG TCATCCTATGGTTTTGTCGATTACTTTGACCGGAGATCTGCTGCCCTTTCTEST: gi|156737274|gb|EV241395.1|EV241395
genomic: TCTCTAGTACTGGTCCCCTCGAAGGGTGCAAGCTCATTAGGAAAGAGAAGgtcagttttc ... tcatatgcagTCATCCTATGGTTTTGTCGATTACTTTGACCGGAGATCTGCTGCCCTTTCT
EST: TCTCTAGTACTGGTCCCCTCGAAGGGTGCAAGCTCATTAGGAAAGAGAAG TCATCCTATGGTTTTGTCGATTACTTTGACCGGAGATCTGCTGCCCTTTCTEST: gi|294966632|gb|GW839623.1|GW839623
genomic: TCTCTAGTACTGGTCCCCTCGAAGGGTGCAAGCTCATTAGGAAAGAGAAGgtcagttttc ... tcatatgcagTCATCCTATGGTTTTGTCGATTACTTTGACCGGAGATCTGCTGCCCTTTCT
EST: TCTCTAGTACTGGTCCCCTCGAAGGGTGCAAGCTCATTAGGAAAGAGAAG TCATCCTATGGTTTTGTCGATTACTTTGACCGGAGATCTGCTGCCCTTTCT
genomic: TCTCTAGTACTGGTCCCCTCGAAGGGTGCAAGCTCATTAGGAAAGAGAAGgtcagttttc ... tcatatgcagTCATCCTATGGTTTTGTCGATTACTTTGACCGGAGATCTGCTGCCCTTTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGTGGGTAATATCCACCCACAGGTTACAGAACCACTTCTTCAAGAGGTTTTCTCTAGTACTGGTCCCCTCGAAGGGTGCAAGCTCATTAGGAAAGAGAAGgtcagttttcattttgccgatttcagaaatcatctttttgatggataagcaatgaccagtcatgccatatactatatgatcataatagcatctgatggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggataag