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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACGGTAGGTACTGCTTCTGGTGGCTGTAATGGAACTGGAAAGCCGCGTGTAAGGGCTCGTCGAGGCCAGGCCACTGATCCTCACAGTATTGCTGAAAGGgttagttgtaaattttgtatgatcatctgaaacaagttcttcatgttgtttgttattcactctcatatctaagacacatcattagactttgaagttgacatgtaaaaaatggctttgataaagactttcctgggttataatctcttttgttgtccctttgaaaaatatctatgatgcag

Basic information

species Vitis vinifera
transcript Vv11s0016g00380.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g00380.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os06g09370.2 (Oryza sativa), 5'ss of exon 6
---TACGGTAGGTACTGCTTCTGGTGGCTGTAATGGAACTGGAAAGCCGCGTGTAAGGGCTCGTCGAGGCCAGGCCACTGATCCTCACAGTATTGCTGAAAGGgttagttgtaaattttgtatgatcatctgaaacaagttcttcatgttgtttgttattcactctcatatctaagacacatcattagactttgaagttgacatgtaaaaaatggctttgataaagactttc-ctgggttataatctcttttgttgtccctttgaaaaatatctatgatgcag
       | |  | | ||| ||||      || ||  | ||  ||||| |||  ||||||||| || || ||||| |||||||||||||||||||||||| |||| |||| |    ||| || |||||          ||||    ||       | |  |  |  ||||      | |    ||||   |||  | ||    || |   |  | |||  ||| |   | ||  || | |  |                                        
ACCCCAAGCAAATTCAGCTCCTGGAAA---TAGTGCCAATGCGAAGCCACGTACAAGGGCTCGCCGTGGACAGGCAACTGATCCTCACAGTATTGCTGAACGGgtgagttct----tttataagatca----------gttcactttgaaacaaatcaaactgttgcata------ataatcgattattttttttaatttgtgtgcacccatggtcttaaatataatttctcattgtgctgcag---------------------------------------

upper sequence: Vv11s0016g00380.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G024530_T01 (Zea mays), 5'ss of exon 5
TACGGTAGGTACTGC-TTCTGGTGGCTGTAATGGAACTGGAAAGCCGCGTGTAAGGGCTCGTCGAGGCCAGGCCACTGATCCTCACAGTATTGCTGAAAGGgttagttgtaaattttgtatgatcatctgaaacaagttcttcatgttgtttgttattcactctcatatctaagacacatcattagactttgaagttgacatgtaaaaaatggctttgataaagacttt-cctgggttataatctcttttgttgtccctttgaaaaatatctatgatgcag
 ||       ||    ||||| |||   |  ||    ||  ||||| || |||||||||||||| || ||||| ||||||||||| || ||||||||| | || |||| |    ||| | ||||||    |    ||| |     |  |   ||||   |     |||| |  ||   || ||| |   ||    |||   | |  |  ||   |||||  |  | ||    |  |||  |                                        
-ACAAATCCAACCAAATTCTGTTGGAAATGGTGTTGGTGTGAAGCCACGAGTAAGGGCTCGTCGTGGACAGGCAACTGATCCTCATAGCATTGCTGAACGAgtgagttttt--ctttatgtgatcagtccacctcagtgcaaacagaaga--gttacata-----atatttttga---attatttg---tttggcttgcattatgtatcataagtttgactacaatttcatatatgttgcag---------------------------------------

upper sequence: Vv11s0016g00380.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G116785_T01 (Zea mays), 5'ss of exon 3
TACGGTAGGTACTGC-TTCTGGTGGCTGTAATGGAACTGGAAAGCCGCGTGTAAGGGCTCGTCGAGGCCAGGCCACTGATCCTCACAGTATTGCTGAAAGGgttagttgtaaatttt----gtatgatcatctgaaacaagttcttcatgttgtt---tgttattcactctcatatctaagacacatcattagactttgaagttgacatgtaaaaaatggctttgataaagactttcctgggttataatctcttttgttgtccctttgaaaaatatctatgatgcag
 ||       ||    ||| | ||    |  ||    ||  || || || |||||||||||||| || || || ||||||||||| |||||||||||| |||| || | |  ||||      |  |  ||  |||    |         ||||     |||| || | |    | | |      | |   |  |   | |||||    | |||        | || |  ||                                                        
-ACAAACTCAACCAAATTCAGCTGTTAATGGTGTTGGTGTGAAACCACGAGTAAGGGCTCGTCGTGGACAAGCAACTGATCCTCATAGTATTGCTGAACGGgtgaggtttttatttatgagatcagtccacttgagggcaaactgaagagttgcataatgtttttgaattgtttgtttcgcttgcttttatgaaggctaaagtttgactataatttcctaatctgctgcag--------------------------------------------------------