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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAATTGCCCTTCATGGAGTTGGCAACAATCAGGGCAGCTACCAATGACTTTTCAGAATCAAACAAGCTCGGACATGGCGGGTTTGGCACTGTTTATAAGgtaacacctgttctgttttttgttattcaaatttagcttcagagacccacatgattttctgatgtgttaaatttccaatggagttgtttcag

Basic information

species Vitis vinifera
transcript Vv10s0116g00170.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32265213|gb|CD716802.1|CD716802
EST:     TTTCAGAATCAAACAAGCTCGGACATGGCGGGTTTGGCACTGTTTATAAG                         GGTGTTCTGCCAAATGGAAAAGAGATAGCAGTTAAAAGGCTATCAAAGAAG
genomic: TTTCAGAATCAAACAAGCTCGGACATGGCGGGTTTGGCACTGTTTATAAGgtaacacctg ... gttgtttcagGGTGTTCTGCCAAATGGAAAAGAGATAGCAGTTAAAAGGCTATCAAAGAAG
EST: gi|30324695|gb|CD007957.1|CD007957
EST:     TTTCAGAATCAAACAAGCTCGGACATGGCGGGTTTGGCACTGTTTATAAG                         GGTGTTCTGCCAAATGGAAAAGAGATAGCAGTTAAAAGGCTATCAAAGAAG
genomic: TTTCAGAATCAAACAAGCTCGGACATGGCGGGTTTGGCACTGTTTATAAGgtaacacctg ... gttgtttcagGGTGTTCTGCCAAATGGAAAAGAGATAGCAGTTAAAAGGCTATCAAAGAAG
EST: gi|32268591|gb|CD717750.1|CD717750
EST:     TTTCAGAATCAAACAAGCTCGGACATGGCGGGTTTGGCACTGTTTATAAG                         GGTGTTCTGCCAAATGGAAAAGAGATAGCAGTTAAAAGGCTATCAAAGAAG
genomic: TTTCAGAATCAAACAAGCTCGGACATGGCGGGTTTGGCACTGTTTATAAGgtaacacctg ... gttgtttcagGGTGTTCTGCCAAATGGAAAAGAGATAGCAGTTAAAAGGCTATCAAAGAAG
EST: gi|32269309|gb|CD718468.1|CD718468
EST:     TTTCAGAATCAAACAAGCTCGGACATGGCGGGTTTGGCACTGTTTATAAG                         GGTGTTCTGCCAAATGGAAAAGAGATAGCAGTTAAAAGGCTATCAAAGAAG
genomic: TTTCAGAATCAAACAAGCTCGGACATGGCGGGTTTGGCACTGTTTATAAGgtaacacctg ... gttgtttcagGGTGTTCTGCCAAATGGAAAAGAGATAGCAGTTAAAAGGCTATCAAAGAAG
EST: gi|32269226|gb|CD718385.1|CD718385
EST:     TTTCAGAATCAAACAAGCTCGGACATGGCGGGTTTGGCACTGTTTATAAG                         GGTGTTCTGCCAAATGGAAAAGAGATAGCAGTTAAAAGGCTATCAAAGAAG
genomic: TTTCAGAATCAAACAAGCTCGGACATGGCGGGTTTGGCACTGTTTATAAGgtaacacctg ... gttgtttcagGGTGTTCTGCCAAATGGAAAAGAGATAGCAGTTAAAAGGCTATCAAAGAAG
EST: gi|30325436|gb|CD008698.1|CD008698
EST:     TTTCAGAATCAAACAAGCTCGGACATGGCGGGTTTGGCACTGTTTATAAG                         GGTGTTCTGCCAAATGGAAAAGAGATAGCAGTTAAAAGGCTATCAAAGAAG
genomic: TTTCAGAATCAAACAAGCTCGGACATGGCGGGTTTGGCACTGTTTATAAGgtaacacctg ... gttgtttcagGGTGTTCTGCCAAATGGAAAAGAGATAGCAGTTAAAAGGCTATCAAAGAAG
EST: gi|32248381|gb|CD714200.1|CD714200
EST:     TTTCAGAATCAAACAAGCTCGGACATGGCGGGTTTGGCACTGTTTATAAG                         GGTGTTCTGCCAAATGGAAAAGAGATAGCAGTTAAAAGGCTATCAAAGAAG
genomic: TTTCAGAATCAAACAAGCTCGGACATGGCGGGTTTGGCACTGTTTATAAGgtaacacctg ... gttgtttcagGGTGTTCTGCCAAATGGAAAAGAGATAGCAGTTAAAAGGCTATCAAAGAAG
EST: gi|32267557|gb|CD716520.1|CD716520
EST:     TTTCAGAATCAAACAAGCTCGGACATGGCGGGTTTGGCACTGTTTATAAG                         GGTGTTCTGCCAAATGGAAAAGAGATAGCAGTTAAAAGGCTATCAAAGAAG
genomic: TTTCAGAATCAAACAAGCTCGGACATGGCGGGTTTGGCACTGTTTATAAGgtaacacctg ... gttgtttcagGGTGTTCTGCCAAATGGAAAAGAGATAGCAGTTAAAAGGCTATCAAAGAAG
EST: gi|32269958|gb|CD719117.1|CD719117
EST:     TTTCAGAATCAAACAAGCTCGGACATGGCGGGTTTGGCACTGTTTATAAG                         GGTGTTCTGCCAAATGGAAAAGAGATAGCAGTTAAAAGGCTATCAAAGAAG
genomic: TTTCAGAATCAAACAAGCTCGGACATGGCGGGTTTGGCACTGTTTATAAGgtaacacctg ... gttgtttcagGGTGTTCTGCCAAATGGAAAAGAGATAGCAGTTAAAAGGCTATCAAAGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAATTGCCCTTCATGGAGTTGGCAACAATCAGGGCAGCTACCAATGACTTTTCAGAATCAAACAAGCTCGGACATGGCGGGTTTGGCACTGTTTATAAGgtaacacctgttctgttttttgttattcaaatttagcttcagagacccacatgattttctgatgtgttaaatttccaatggagttgtttcag

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