Sequence
atgc intronic sequence ATGC exonic sequenceGTATTGCAAATGCGAGATGCCTTATAACCCAGATGATCTTATGGTCCAGTGCGAGGGGTGCAAGGACTGgtaacctgcttttgttattcttttgttgggtttccggttgttgttgtgttttgtgtcatttcagttttgtatctgattttgtaaaaacatggaaactcaa...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0116g00160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os09g21770.1 (Oryza sativa), 5'ss of exon 3
GTATTGCAAATGCGAGATGCCTTATAACCCAGATGATCTTATGGTCCAGTGCGAGGGGTGCAAGGACTGgtaacctgcttttgttattcttttgttgggtttccggttgttgttgtgttttgtgtcatttcagttttgtatctgattttgtaaaaacat-ggaaactcaa-
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GTACTGCAAGTGCGAGATGCCGTATAACCCGGATGATCTAATGGTGCAGTGCGAGGGATGCAAGGACTGgtaaatcacttggggacatccttacctttcatactgcatctggctgaccgaagggt-atttcatgcccgtcattt-ttaggaggaagtatcatagactcagt
upper sequence: Vv10s0116g00160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os08g32620.2 (Oryza sativa), 5'ss of exon 2
-------------------------------GTATTGCAAATGCGAGATGCCTTATAACCCAGATGATCTTATGGTCCAGTGCGAGGGGTGCAAGGACTGgtaacctgcttttgttattcttttgttgggtttccggttgttgttgtgttttgtgtcatttcagttttgtatc-tgatt-ttgtaaaaacatggaaactcaa
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TGCTTGTGTTTTCTTTTTCGTTTTTCTGAAGATACTGCAAGTGTGAGATGCCATACAACCCGGATGATCTCATGGTGCAGTGCGATGACTGCAAGGACTGgtaatt--ccattaataaaccgcctctgttatgatgcatttcagtctatatagtgaatgtacactggaaaatcatggtaacaataatgaaattggcacccat
upper sequence: Vv10s0116g00160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os08g32620.1 (Oryza sativa), 5'ss of exon 3
GTATTGCAAATGCGAGATGCCTTATAACCCAGATGATCTTATGGTCCAGTGCGAGGGGTGCAAGGACTGgtaacctgcttttgttattcttttgttgggtttccggttgttgttgtgttttgtgtcatttcagttttgtatc-tgatt-ttgtaaaaacatggaaactcaa
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ATACTGCAAGTGTGAGATGCCATACAACCCGGATGATCTCATGGTGCAGTGCGATGACTGCAAGGACTGgtaatt--ccattaataaaccgcctctgttatgatgcatttcagtctatatagtgaatgtacactggaaaatcatggtaacaataatgaaattggcacccat
upper sequence: Vv10s0116g00160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G119357_T01 (Zea mays), 5'ss of exon 3
GTATTGCAAATGCGAGATGCCTTATAACCCAGATGATCTTATGGTCCAGTGCGAGGGGTGCAAGGACTGgta-acctgcttttgttattcttttgttgggtttccggttgttgttgtgttttgtgtcatttcagttttgtatctgattttgtaaaaacatggaaactcaa--
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GTATTGCAAATGTGAGATGCCATACAACCCGGATGACCTCATGGTGCAGTGCGAAGCTTGCAAGGACTGgtacatttgtctcaatgattttcaatttacatttc--actgatatttgcctttgttcagtctattttatgcttct-acaaagcaaatgctttaaatctctgga
upper sequence: Vv10s0116g00160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G091265_T03 (Zea mays), 5'ss of exon 2
-------------------------------GTATTGCAAATGCGAGATGCCTTATAACCCAGATGATCTTATGGTCCAGTGCGAGGGGTGCAAGGACTGgtaacctgcttttgttattcttttgttgggtttccggttgttgttgtgttttgtgtcatttcagttttgtatc-tgattttgtaaaaacatggaaactcaa--
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TGATCTTATGTGACATTGTTTGTATGTGAAGATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTGTGAAGGATGCAAGGACTGgtaaaatcctgtgaaaactccacacttt--tctcccattagtgc-atgttttgagaggggtttatctagtaaaatcactgtgaaatggctccacattttgccc
upper sequence: Vv10s0116g00160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G091265_T05 (Zea mays), 5'ss of exon 3
GTATTGCAAATGCGAGATGCCTTATAACCCAGATGATCTTATGGTCCAGTGCGAGGGGTGCAAGGACTGgtaacctgcttttgttattcttttgttgggtttccggttgttgttgtgttttgtgtcatttcagttttgtatc-tgattttgtaaaaacatggaaactcaa--
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ATATTGCAAGTGTGAGATGCCGTACAACCCGGATGACCTCATGGTGCAGTGTGAAGGATGCAAGGACTGgtaaaatcctgtgaaaactccacacttt--tctcccattagtgc-atgttttgagaggggtttatctagtaaaatcactgtgaaatggctccacattttgccc
upper sequence: Vv10s0116g00160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM5G871463_T02 (Zea mays), 5'ss of exon 3
GTATTGCAAATGCGAGATGCCTTATAACCCAGATGATCTTATGGTCCAGTGCGAGGGGTGCAAGGACTGgta-acctgcttttgttattcttttgttgggtttccggttgttgttgtgttttgtgtcatttcagttttgtatctgattttgtaaaaacatggaaactcaa--
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GTATTGCAAATGTGAGATGCCGTACAACCCCGATGACCTCATGGTGCAGTGCGATGCTTGCAAGCACTGgtacatttgttacaatgatttgcaatttacatttc--actgatatttgcctttgttccccgtctattatgtgactg-tacaaagcatgttttaaatctcctga
upper sequence: Vv10s0116g00160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM5G871463_T01 (Zea mays), 5'ss of exon 1
-------------------------------GTATTGCAAATGCGAGATGCCTTATAACCCAGATGATCTTATGGTCCAGTGCGAGGGGTGCAAGGACTGgta-acctgcttttgttattcttttgttgggtttccggttgttgttgtgttttgtgtcatttcagttttgtatctgattttgtaaaaacatggaaactcaa--
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GTGATGATTGGGTTGTCTATTTTCTCTCAAGGTATTGCAAATGTGAGATGCCGTACAACCCCGATGACCTCATGGTGCAGTGCGATGCTTGCAAGCACTGgtacatttgttacaatgatttgcaatttacatttc--actgatatttgcctttgttccccgtctattatgtgactg-tacaaagcatgttttaaatctcctga
upper sequence: Vv10s0116g00160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G34740.1 (Glycine max), 5'ss of exon 3
GTATTGCAAATGCGAGATGCCTTATAACCCAGATGATCTTATGGTCCAGTGCGAGGGGTGCAAGGACTGgtaacctgcttttgttattcttttgttgggtttccg--gttgttgttgtgttttgtgtcatttcagttttgtatctgattttgtaaaaacatggaaactcaa
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GTATTGCAAGTGCGAGATGCCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTGgtaaaaccagtatattctgcttttttttgtttactgttattacatttgtgagtggtttttggttgtctggttctctaattttagcattagatgcgttgtt--
upper sequence: Vv10s0116g00160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G35680.2 (Glycine max), 5'ss of exon 3
GTATTGCAAATGCGAGATGCCTTATAACCCAGATGATCTTATGGTCCAGTGCGAGGGGTGCAAGGACTGgtaacctgcttttgttattcttttgttgggtttccggttgttgttgtgttttgtgtcatttcagtttt---gtatctgattttgtaaaaacatggaaactcaa
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GTATTGCAAGTGCGAGATGCCTTATAACCCAGATGACCTCATGGTGCAGTGTGAGGGGTGCAAGGATTGgtaaagccagtgtattctgctttctttg--tttactgttattacatttgtgagtggtttttggatgtccgggtctctaattttagcattagatgcgttgttt-
upper sequence: Vv10s0116g00160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA06G34850.1 (Glycine max), 5'ss of exon 2
GTATTGCAAATGCGAGATGCCTTATAACCCAGATGATCTTATGGTCCAGTGCGAGGGGTGCAAGGACTGgtaa---cctgcttttgtta--ttcttttgttgggtttccggttgttgttgtgttttgtgtcatttcagttttgtatctgattttgtaaaaacatggaaactcaa
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GTATTGCAAATGTGAGATGCCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAGGATTGgtaagactcggtttattctgatttactttgtttggagtttggattttgtttatgtatgtggaatttgagaaatagatgttatttactgggttgaagggat-----
upper sequence: Vv10s0116g00160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA12G20180.1 (Glycine max), 5'ss of exon 3
GTATTGCAAATGCGAGATGCCTTATAACCCAGATGATCTTATGGTCCAGTGCGAGGGGTGCAAGGACTGgtaac-ctgcttttgttattcttttgttgggtttccggttgttgttgtgttttgtgtcatttcagttttgtatctgattttgtaaaaacatggaaactcaa--
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GTATTGCAAATGTGAGATGCCTTATAACCCGGATGATCTCATGGTACAATGTGAAGGGTGCAAGGATTGgtaagactcggtgtattctgctttactttgttgtgttattgtgtttggagtttgg---attttgcttatttaggtgtttgtttatgtatgtggaatttgagaa
upper sequence: Vv10s0116g00160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S307_14V6.1 (Physcomitrella patens), 5'ss of exon 3
GTATTGCAAATGCGAGATGCCTTATAACCCAGATGATCTTATGGTCCAGTGCGAGGGGTGCAAGGACTGgtaacctgcttttgttattcttttgttgggtttccg-gttgtt-gttgtgttttgtgtcatttcagttttgtatctgattttgtaaaaacatggaaactcaa
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GTATTGTAAATGTGAGATGCCTTATAATCCAGATGATTTGATGGTTCAATGTGAGACTTGCAAAGATTGgtaagttctcttcatctcatccttatttagtcagtatattgtgagcagcttgtcttgtacttcaagaggcaaattgtagagtctgaatcactgaagcctt--
upper sequence: Vv10s0116g00160.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ26805 (Selaginella moellendorffii), 5'ss of exon 3
GTATTGCAAATGCGAGATGCCTTATAACCCAGATGATCTTATGGTCCAGTGCGAGGGGTGCAAGGACTGgtaa---cctgcttttgttattcttttgttgggtttccggttgttgttgtgttttgtgtcatttcagttttgtatctgattttgtaaaaacatggaaactcaa
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GTACTGCAAGTGCGAGATGCCTTACAACCCGGATGATCTTATGGTGCAGTGTGAGGAGTGCAAAGACTGgtaagaatcagtttctctcaaa-tccaaaagccttggcagcctccgatgaaaaaaatggcag-----------------------------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110428298|gb|EC994766.1|EC994766EST: CCTTATAACCCAGATGATCTTATGGTCCAGTGCGAGGGGTGCAAGGACTG GTATCATCCTGTTTGTGTTGAAATGACTATTGAAGCAGCNNNNNNNCTAGA
genomic: CCTTATAACCCAGATGATCTTATGGTCCAGTGCGAGGGGTGCAAGGACTGgtaacctgct ... atccttgcagGTATCATCCTGTTTGTGTTGAAATGACTATTGAAGCAGCAAAAAAACTAGA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTATTGCAAATGCGAGATGCCTTATAACCCAGATGATCTTATGGTCCAGTGCGAGGGGTGCAAGGACTGgtaacctgcttttgttattcttttgttgggtttccggttgttgttgtgttttgtgtcatttcagttttgtatctgattttgtaaaaacatggaaactcaa
- - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggaaac