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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTTTTGGGGTTCTCTGTCCTTGTTGGTGCCAGTGCTTGGGTTGATTTGTTGgtatgttttttttcataacaatttcaattaagtctgaaacttgtgttttgctgttgtttatagcccagttttctcatgttgaactgaagacctatttgtggttcag

Basic information

species Vitis vinifera
transcript Vv10s0116g00010.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00010.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G04860.1 (Arabidopsis thaliana), 5'ss of exon 5
GTTCTTTTGGGGTTCTCTGTCCTTGTTGGTGCCAGTGCTTGGGTTGATTTGTTGgtatgttttttttcataacaatttcaattaagtctgaaacttgtgttttgctgttgtttatagcccagttttctcatgttgaactgaagacctatttgtggttcag
|| ||| | || |||||| ||||||||||||||||||||||||| ||| | ||||||| |  |        |  ||  |||  || |      |  || | ||    |  ||| |  ||||  ||        |    | || || | |  |        
GTGCTTCTTGGCTTCTCTATCCTTGTTGGTGCCAGTGCTTGGGTGGATCTTTTGgtatatactca-----gattatcccaaaaaatttcttctccagtctcttttgatcttttgtcacccaagttaacttcagtctgatcaaaacatttcag--------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110373720|gb|EC938015.1|EC938015
EST:     TTTTGGGGTTCTCTGTCCTTGTTGGTGCCAGTGCTTGGGTTGATTTGTTG                         GGTATGATTGCTGGTCATGCCTACTATTTTCTTGAAGATGTGTATCCGCGA
genomic: TTTTGGGGTTCTCTGTCCTTGTTGGTGCCAGTGCTTGGGTTGATTTGTTGgtatgttttt ... tgtggttcagGGTATGATTGCTGGTCATGCCTACTATTTTCTTGAAGATGTGTATCCGCGA
EST: gi|110387615|gb|EC952298.1|EC952298
EST:     TTTTGGGGTTCTCTGTCCTTGTTGGTGCCAGTGCTTGGGTTGATTTGTTG                         GGTATGATTGCTGGTCATGCCTACTATTTTCTTGAAGATGTGTATCCGCGA
genomic: TTTTGGGGTTCTCTGTCCTTGTTGGTGCCAGTGCTTGGGTTGATTTGTTGgtatgttttt ... tgtggttcagGGTATGATTGCTGGTCATGCCTACTATTTTCTTGAAGATGTGTATCCGCGA