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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCCTGCTCTTCATCTCCACGGACAAGATTGCCTTCTGCAGTGAGAGAGCAATCAAATTCTCTTCTGCAAATGGGGAATTGGTTAGAATTCACTATAAGgtaattagcataactcttttcataacatctaacgtataatctgattaatttctgtctcctcttcatggttgttgacatctacataaaatttatctcgtgcag

Basic information

species Vitis vinifera
transcript Vv10s0071g00320.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0071g00320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G23500.1 (Glycine max), 5'ss of exon 2
AGGCCTGCTCTTCATCTCCACGGACAAGATTGCCTTCTGCAGTGAGAGAGCAATCAAATTCTCTTCTGCAAATGGGGAATTGGTTAGAATTCACTATAAGgtaattagcataactcttttcataacatctaacgtataatctgattaatttctgtctcctcttcatggttgttgacatctacataaaatttatctcgtgcag------
|||  | |||||||||||||| |||||| |||||||||||||||||||| |||| ||| ||| |  |   || ||  |  || | || || |  |||||||| | |  || ||     | |||  |||   | |  |||  | |  | |   | |            |    | | ||  | || ||| || |||| |          
AGGTTTCCTCTTCATCTCCACTGACAAGGTTGCCTTCTGCAGTGAGAGATCAATGAAAATCTTTAGTCAGAAAGGCCATATGTTGAGGATCCGTTATAAGgtcagt--cacaaagtaatacatg-cat---aggcctaacttaacaagtccttattgtagaagataagaaagtaaaat--aaatcaaacttctctcataagttaaaat

upper sequence: Vv10s0071g00320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G43300.1 (Glycine max), 5'ss of exon 2
AGGCCTGCTCTTCATCTCCACGGACAAGATTGCCTTCTGCAGTGAGAGAGCAATCAAATTCTCTTCTGCAAATGGGGAATTGGTTAGAATTCACTATAAGgtaattagcataactcttttcataacatctaa---cgtataatctgattaatttctgtctcctcttcatggttgttgacatctacataaaatttatctcgtgcag
|||  | |||||||||||||| |||||| |||||||||||||||||||| |||| ||| ||| | ||   || ||  |  || | || ||||  || ||||| | |     |    | |  | ||    |||    | |||| ||  | ||    |  ||  |  | | ||      | |   |  ||||||  |||        
AGGTTTCCTCTTCATCTCCACTGACAAGGTTGCCTTCTGCAGTGAGAGATCAATGAAAGTCTTTACTCGGAAAGGTCATATGTTGAGGATTCGTTACAAGgtcagtcatgaagtaatatatacaaaggttaaatttggataaacttctcaacaagta-cttgtagttagggaaaaaaataagaaggtaaaatgaatcgaac----

upper sequence: Vv10s0071g00320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G43320.1 (Glycine max), 5'ss of exon 2
AGGCCTGCTCTTCATCTCCACGGACAAGATTGCCTTCTGCAGTGAGAGAGCAATCAAATTCTCTTCTGCAAATGGGGAATTGGTTAGAATTCACTATAAGgtaattagcataactcttttcataacatctaa---cgtataatctgattaatttctgtctcctcttcatggttgttgac--atctacataaaatttatctcgtgcag---------------------------------------------------
|||  | |||||||||||||| |||||| |||||||||||||||||||| |||| ||| ||| | ||   || ||  |  || | || || |  |||||||| | |  || |      |  | |    | ||    | | || || |  || | ||   |       | |       |   |  || || ||| || ||||                                                         
AGGTTTCCTCTTCATCTCCACTGACAAGGTTGCCTTCTGCAGTGAGAGATCAATGAAAGTCTTTACTCGGAAAGGCCATATGTTGAGGATCCGTTATAAGgtcagtcacaaagtaacatataaataggccaaatttgaacaaacttaacaagtccttattggagaagaagaaaagaaagtaaaataaatcaaacttctctcacaagtttcttgatccaagttttgttgaagttctaaagtatattcggtcatgtgcag

upper sequence: Vv10s0071g00320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G23510.1 (Glycine max), 5'ss of exon 2
AGGCCTGCTCTTCATCTCCACGGACAAGATTGCCTTCTGCAGTGAGAGAGCAATCAAATTCTCTTCTGCAAATGGGGAATTGGTTAGAATTCACTATAAGgtaattagcataactcttttcataacatctaacgtataatctgattaatttctgtctcctcttcatggttgttgacatctacataaaatttatctcgtgcag--
|||  | |||||||||||||| |||||| |||||||||||||||||||| |||| ||| ||| | ||   || ||  |  || | || || |  |||||||| | |     |    | |  | ||    |||   | | |    |       |   | |   |  ||    |  || | |     || | | | |  |      
AGGTTTCCTCTTCATCTCCACTGACAAGGTTGCCTTCTGCAGTGAGAGATCAATGAAAGTCTTTACTCGGAAAGGCCATATGTTGAGGATCCGTTATAAGgtcagtcattaagtaatatatacaa----taaatcaaacttctctcgcacattaaattcaacttgtgcacttcaactttttttggaattctcttttctaacttc

upper sequence: Vv10s0071g00320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G23520.1 (Glycine max), 5'ss of exon 2
AGGCCTGCTCTTCATCTCCACGGACAAGATTGCCTTCTGCAGTGAGAGAGCAATCAAATTCTCTTCTGCAAATGGGGAATTGGTTAGAATTCACTATAAGgtaattagcataactcttttcataacatctaa---cgtataatctgattaatttctgtctcctcttcatggttgttgacatctacataaaatttatctcgtgcag
|||  | |||||||||||||| |||||| ||||||| |||||||||||| |||| ||| ||| | ||   || ||  |  || | || ||||  |||||||| | |     |    | |  | ||    |||    | |||| ||  |       |   |    ||       |   | |   |  ||||||  |||        
AGGTTTCCTCTTCATCTCCACTGACAAGGTTGCCTTTTGCAGTGAGAGATCAATGAAAGTCTTTACTCAGAAAGGTCATATGTTGAGGATTCGTTATAAGgtcagtcatgaagtaatatatacaaaggttaaatttggataaacttctcggcaagtacttatagttaggaaaagaaaataggaaggtaaaatgaatcgaa-----

upper sequence: Vv10s0071g00320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G43330.1 (Glycine max), 5'ss of exon 1
AGGCCTGCTCTTCATCTCCACGGACAAGATTGCCTTCTGCAGTGAGAGAGCAATCAAATTCTCTTCTGCAAATGGGGAATTGGTTAGAATTCACTATAAGgtaattagcataactcttttcataacatctaacgtataatctgattaatttctgtctcctcttcatggttgttgacatc----tacataaaatttatctcgtgcag
 || || ||||||||||| || |||||| ||||||| |||||||||||| |||| ||| | | | ||   || ||  |  || | || ||  | |||| ||| | |  ||| |     || ||| |||  ||| | |  ||   ||  |   | |||       |   |||||||  |     ||  || |  |  |   || |||
GGGTCTCCTCTTCATCTCTACAGACAAGGTTGCCTTTTGCAGTGAGAGATCAATGAAAGTTTTTACTCAGAAAGGCCACATGTTGAGGATCTATTATACGgtcagt--catgaagtaatttata-cataaaacctct--tcatgtttctcagtttcttgatccaagatttgttgaagttctgataggtatacatggttgtgtacag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|45771017|gb|CN006869.1|CN006869
EST:     CAATCAAATTCTCTTCTGCAAATGGGGAATTGGTTAGAATTCACTATAAG                         GTCCTGATTCCACTAAGAAAGATAAAGATAGCCAACCAGAGTGAGAACACG
genomic: CAATCAAATTCTCTTCTGCAAATGGGGAATTGGTTAGAATTCACTATAAGgtaattagca ... tctcgtgcagGTCCTGATTCCACTAAGAAAGATAAAGATAGCCAACCAGAGTGAGAACACG
EST: gi|34547256|gb|CF515488.1|CF515488
EST:     CAATCAAATTCTCTTCTGCAAATGGGGAATTGGTTAGAATTCACTATAAG                         GTCCTGATTCCACTAAGAAAGATAAAGATAGCCAACCAGAGTGAGAACACG
genomic: CAATCAAATTCTCTTCTGCAAATGGGGAATTGGTTAGAATTCACTATAAGgtaattagca ... tctcgtgcagGTCCTGATTCCACTAAGAAAGATAAAGATAGCCAACCAGAGTGAGAACACG
EST: gi|110717324|gb|EE093091.1|EE093091
EST:     CAATCAAATTCTCTTCTGCAAATGGGGAATTGGTTAGAATTCACTATAAG                         GTCCTGATTCCACTAAGAAAGATAAAGATAGCCAACCAGAGTGAGAACACN
genomic: CAATCAAATTCTCTTCTGCAAATGGGGAATTGGTTAGAATTCACTATAAGgtaattagca ... tctcgtgcagGTCCTGATTCCACTAAGAAAGATAAAGATAGCCAACCAGAGTGAGAACACG
EST: gi|34550790|gb|CF519006.1|CF519006
EST:     CAATCAAATTCTCTTCTGCAAATGGGGAATTGGTTAGAATTCACTATAAG                         GTCCTGATTCCACTAAGAAAGATAAAGATAGCCAACCAGAGTGAGAACACG
genomic: CAATCAAATTCTCTTCTGCAAATGGGGAATTGGTTAGAATTCACTATAAGgtaattagca ... tctcgtgcagGTCCTGATTCCACTAAGAAAGATAAAGATAGCCAACCAGAGTGAGAACACG
EST: gi|110717019|gb|EE092507.1|EE092507
EST:     CAATCAAATTCTCTTCTGCAAATGGGGAATTGGTTAGAATTCACTATAAG                         GTCCTGATTCCACTAAGAAAGATAAAGATAGCCAACCAGAGTGAGAACACN
genomic: CAATCAAATTCTCTTCTGCAAATGGGGAATTGGTTAGAATTCACTATAAGgtaattagca ... tctcgtgcagGTCCTGATTCCACTAAGAAAGATAAAGATAGCCAACCAGAGTGAGAACACG
EST: gi|34547168|gb|CF515400.1|CF515400
EST:     CAATCAAATTCTCTTCTGCAAATGGGGAATTGGTTAGAATTCACTATAAG                         GTCCTGATTCCACTAAGAAAGATAAAGATAGCCAACCAGAGTGAGAACACG
genomic: CAATCAAATTCTCTTCTGCAAATGGGGAATTGGTTAGAATTCACTATAAGgtaattagca ... tctcgtgcagGTCCTGATTCCACTAAGAAAGATAAAGATAGCCAACCAGAGTGAGAACACG
EST: gi|34549919|gb|CF518151.1|CF518151
EST:     CAATCAAATTCTCTTCTGCAAATGGGGAATTGGTTAGAATTCACTATAAG                         GTCCTGATTCCACTAAGAAAGATAAAGATAGCCAACCAGAGTGAGAACACG
genomic: CAATCAAATTCTCTTCTGCAAATGGGGAATTGGTTAGAATTCACTATAAGgtaattagca ... tctcgtgcagGTCCTGATTCCACTAAGAAAGATAAAGATAGCCAACCAGAGTGAGAACACG