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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATACTTGACGGTGTAGATGACCTTATGCAACTTAGTTACTTAAATGAGCCATCGGTGTTGTACAATCTTCAACATAGATACAATCAAGATATGATTTATgtaagtgtttatttttcttctaaacatattttttaatttgcttctgaaatgtgccagtttctctaatgtttttattggtggtgtgcctcttatatgcttgttgtag

Basic information

species Vitis vinifera
transcript Vv10s0071g00210.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0071g00210.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G23660.1 (Glycine max), 5'ss of exon 4
TATACTTGACGGTGTAGATGACCTTATGCAACTTAGTTACTTAAATGAGCCATCGGTGTTGTACAATCTTCAACATAGATACAATCAAGATATGATTTATgtaagtgtttatttttcttctaaacatattttttaatttgcttctgaaatgtgccagtttctctaatgtttttattggtggtgtgcctcttatatgcttgttgtag
||| ||||| || || |||||||| |||||||| ||||| ||||||||||||||||| || | ||| || ||| |||||||||||||  ||||||| ||||||||| ||||| |  |||       | | ||  |||||| |||  ||   |  ||  ||   | |  |   | |      |                        
TATTCTTGATGGAGTGGATGACCTCATGCAACTAAGTTATTTAAATGAGCCATCGGTTTTATTCAACCTGCAATATAGATACAATCATAATATGATCTATgtaagtctttatatcgcttaagtttttctcttcaaatttgtttcctaatcataacatctttaattacataactgtattcaattcag--------------------

upper sequence: Vv10s0071g00210.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA20G00320.1 (Glycine max), 5'ss of exon 4
TATACTTGACGGTGTAGATGACCTTATGCAACTTAGTTACTTAAATGAGCCATCGGTGTTGTACAATCTTCAACATAGATACAATCAAGATATGATTTATgtaagtgtttatttttcttctaaacatatttt-ttaatttgcttctgaaatgtgccagtttctctaatgtttttattggtggtgtgcctcttatatgcttgttgtag
||| ||||| || || |||||||| |||||||||||||| ||||||||||| || || || | ||| || ||| |||||||||||||| | ||||||||||||||| ||||| | ||||  |||  | | |  | |||||| ||||  |   |  |      |||||||| |||||     ||||    ||   |||     |  ||
TATCCTTGATGGAGTGGATGACCTCATGCAACTTAGTTATTTAAATGAGCCGTCAGTTTTATTCAACCTGCAATATAGATACAATCAAAACATGATTTATgtaagtctttatgtctctttaaaaattttctcatcaatttgtttcttgatcataac-----ttctaatgtatttat-----gtgtataact---atgtacaattcag

upper sequence: Vv10s0071g00210.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G42180.1 (Glycine max), 5'ss of exon 2
TATACTTGACGGTGTAGATGACCTTATGCAACTTAGTTACTTAAATGAGCCATCGGTGTTGTACAATCTTCAACATAGATACAATCAAGATATGATTTATgtaagtgtttatttttcttctaaacatatttt-ttaatttgcttctgaaatgtgccagtttctctaatgtttttattggtggtgtgcctcttatatgcttgttgtag
||| ||||| || || |||||||| |||||||||||||| |||||||| || || || || ||||| || | | |||||||||||||| | ||||||||||||||| ||||| | ||||  ||   | | |  | |||| | ||||  |   |  |      |  ||||| |||||     ||||    ||   |||     |  ||
TATCCTTGATGGGGTGGATGACCTCATGCAACTTAGTTATTTAAATGAACCGTCAGTTTTATACAACCTGCGATATAGATACAATCAAAACATGATTTATgtaagtctttatgtctctttaaagtttttctcatcaattagtttcttgatcataac-----tttgaatgtatttat-----gtgtataact---atgtacaattcag

upper sequence: Vv10s0071g00210.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G43230.1 (Glycine max), 5'ss of exon 3
TATACTTGACGGTGTAGATGACCTTATGCAACTTAGTTACTTAAATGAGCCATCGGTGTTGTACAATCTTCAACATAGATACAATCAAGATATGATTTATgtaagtgtttatttttcttctaaacatattttttaatttgcttctgaaatgtgccagtttctctaatgtttttattggtggtgtgcctcttatatgcttgttgtag
||| ||||| || || |||||||| |||||||| ||||| ||||| || ||||| || || | ||| || ||| |||||||||||||  ||||||| ||||||||| ||||| |  |||       | | ||  | |||| |||  ||   |  ||  | || |  |   || |                                
TATTCTTGATGGGGTGGATGACCTCATGCAACTAAGTTATTTAAACGAACCATCAGTTTTATTCAACCTGCAATATAGATACAATCATAATATGATCTATgtaagtctttatatcactttagtttttctcttaaattttgtttcctaatcataaca--tactgtgttcaattcag-------------------------------

upper sequence: Vv10s0071g00210.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G19960.2 (Arabidopsis thaliana), 5'ss of exon 4
TATACTTGACGGTGTAGATGACCTTATGCAACTTAGTTACTTAAATGAGCCATCGGTGTTGTACAATCTTCAACATAGATACAATCAAGATATGATTTATgtaagtgtttattt------ttcttctaaacatatt----ttttaatttgcttctgaaatgtgccagtttctctaat---gtttttattggtggtgtgcc--tcttatatgcttgttgtag---
||| ||||| || || || || |||||||| ||||||||||||||||||||||| ||||||||||| ||  |  |||| ||||| ||||| ||||| ||||||||| |||  ||      || || |   |  ||     |  || | |    |   ||| ||  | | | | |  |   |  | || |  || |  ||    ||| |    || | ||     
TATTCTTGATGGAGTGGACGATCTTATGCAGCTTAGTTACTTAAATGAGCCATCAGTGTTGTACAACCTCAACTATAGGTACAACCAAGACATGATATATgtaagtcttttgttgtgatatttttttttgctcatcaggataatagtctttcccctgaatctgttactatatatgttccagcatctactcttgcttggctaacctttttcctttatggtgctag

upper sequence: Vv10s0071g00210.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G50360.1 (Arabidopsis thaliana), 5'ss of exon 4
TATACTTGACGGTGTAGATGACCTTATGCAACTTAGTTACTTAAATGAGCCATCGGTGTTGTACAATCTTCAACATAGATACAATCAAGATATGATTTATgtaagt-gtttatttttcttctaaacatattttttaatttgcttctgaaatgtgccagtttctctaatgtttttattggtggtgtgcctc-ttatatgcttgttgtag-------------------
||| ||||| || ||||| || || |||||||| ||||| |||||||||||| | ||||||||||| ||| |  |||| ||||| || || ||||| ||||||||  |||| |  |  | |     || |||| | |  || |    |  | | |      || || | |  | |   ||  |   | |   ||| ||||| |   |                    
TATTCTTGATGGAGTAGACGATCTCATGCAACTAAGTTATTTAAATGAGCCAGCAGTGTTGTACAACCTTGAGTATAGGTACAACCAGGACATGATATATgtaagccgtttgtgctaatacagtttattttttctgacatgttgacaatctcttctctgaactata-tatagtaaaatgttataccctttactatttgcttttctgaattttcctttatggtgctag