Sequence
atgc intronic sequence ATGC exonic sequenceAAGCCACAGGCGGCTGTTGACCGTACACTAGATACCAAAGCTTTCAAAGGCTGGGTAGAAGTAGACAATCCATGGACAAATGATGATGAGACTGACAATGgtggattcttttaccctgcacattctaacatttttcattttatgtttagttaaacgtttttgttaatttatttcttttcaagccaattgcatctttctga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g03950.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os03g52340.2 (Oryza sativa), 5'ss of exon 3
AAGCCACAGGCGGCTGTTGACCGTACACTAGATACCAAAGCTTTCAAAGGCTGGGTAGAAGTAGACAATCCATGGACAAATGATGATGAGACTGACAATGgtggattcttttaccctgcacattctaacatttttcattttatgtttagttaaacgtttttgttaatttatttcttttcaagccaattgcatctttctga
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AAACCACAGGCTACTGTTGATAGAACCCTTGATGCCAAGGTTTTCAAAGGATGGATTGAAACCGACAATCCATGGACATATGACGATGAGACTGATAATGgtaaagttgttt---ttgcatcctttta-gtatattgtgtcccttttgtgtgttctttattacta-tatgtgacagttgctgaaaaaaacatcatttcag
upper sequence: Vv10s0003g03950.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G10830.2 (Glycine max), 5'ss of exon 3
AAGCCACAGGCGGCTGTTGACCGTACACTAGATACCAAAGCTTTCAAAGGCTGGGTAGAAGTAGACAATCCATGGACAAATGATGATGAGACTGACAATGgtggattcttttac---cctgcacat-tctaacatttttcattttatgtttagttaaacgtttttgttaatttatttcttttcaagccaattgcatctttctga
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AAACCTCAGGCAGCTGTTGACCGTACTTTAGACAGTAAAGCTTTCAGAGGATGGACAGAAATAGACAATCCATGGACAAATGACGATGAGACTGACAATGgtgcgttactctgtatgctgattcgtatctaaaatttgtggtcatagttgtagtttactaattatgttc-ttcaaatgagtttatattgat-gaataatttt--
upper sequence: Vv10s0003g03950.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G23150.1 (Glycine max), 5'ss of exon 3
AAGCCACAGGCGGCTGTTGACCGTACACTAGATACCAAAGCTTTCAAAGGCTGGGTAGAAGTAGACAATCCATGGACAAATGATGATGAGACTGACAATGgtggattcttttaccctgcacattctaacatttttcattttatgtt-tagttaaacgtttttgttaatttatttcttttcaagccaat--tgcatctttctga
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AAACCTCAGGCAGCCGTTGACCGTACTTTAGACAGTAAAGCTTTCAGAGGATGGACAGAAATAGACAATCCATGGACAAATGATGATGAGACTGACAATGgtgcgttactctgta-tgctgattcgtatctaaattatttgtggtcatagttgta--ttttatctaattaattgtgtgaaatattaacggtgaagtatatagaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110728702|gb|EE104502.1|EE104502EST: CTGGGTAGAAGTAGACAATCCATGGACAAATGATGATGAGACTGACAATG CGGAGATGACATATGTGAATCTTCAACTGAACCCTGAACGCTACACTGGAT
genomic: CTGGGTAGAAGTAGACAATCCATGGACAAATGATGATGAGACTGACAATGgtggattctt ... tcatttgcagCGGAGATGACATATGTGAATCTTCAACTGAACCCTGAACGCTACACTGGAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGCCACAGGCGGCTGTTGACCGTACACTAGATACCAAAGCTTTCAAAGGCTGGGTAGAAGTAGACAATCCATGGACAAATGATGATGAGACTGACAATGgtggattcttttaccctgcacattctaacatttttcattttatgtttagttaaacgtttttgttaatttatttcttttcaagccaattgcatctttctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA