Sequence
atgc intronic sequence ATGC exonic sequenceGCACCTTCTTGTTCAGAAATCTATCCCAAAGGGATTGGTTTTTGTTGGGGAATTACCTTCTGGATCTAAAGGTGCTTTTAGTCCAAAAATGGATCACCTGgtatgtggttcgttttaactactttaagttaatctgttcaaagatcaatctaggttatggctacttaatttgtttttgagatcaggagattaagaaacag...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g03280.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G150201_T03 (Zea mays), 5'ss of exon 3
GCACCTTCTTGTTCAGAAATCTATCCCAAAGGGATTGGTTTTTGTTGGGGAATTACCTTCTGGATCTAAAGGTGCTTTTAGTCCAAAAATGGATCACCTGgtatgtggtt-------------cgttttaactactttaag---ttaatctgttcaaagatcaatctaggttatggctacttaatttgtttttgagatcaggagattaagaaacag-----
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GCATCTTCTTGTTCGGAAAACTGTTCCAAATGGGTTGGTATTTGTTGGGGAGCTTCCATTTGGACGAAATGGCGGGTTTAGTCCTAAAATGGATCACCTGgtatgcagttgtggctgagcatctgttttctcgcactcatattcttagtctcttctttatctggccaagattttgtgacctttcttgtgttgtggtagcactgaatttcttcatattgcag
upper sequence: Vv10s0003g03280.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G28910.1 (Glycine max), 5'ss of exon 3
GCACCTTCTTGTTCAGAAATCTATCCCAAAGGGATTGGTTTTTGTTGGGGAATTACCTTCTGGATCTAAAGGTGCTTTTAGTCCAAAAATGGATCACCTGgtatgtggttcgttttaactactttaagttaatctgttcaaagatcaatctaggttatggctacttaatttgtttttgag-atcaggagattaagaaacag-------
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ACATCTTCTTGTTCGGAAATCTATCCCAAATGGACTAGTTTTTGTTGGAGAATTGCCTTATGGATCTAACAGTGGTTTCAGCCCAAAAATGGATCACCTGgtatgcagtactttctaatt--ttcaagtttggcattgcaga---taatttat-ttagggctacagtagttgcttgaaaatatcattaagt--agaaatagtgcaaaa
upper sequence: Vv10s0003g03280.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G10130.1 (Glycine max), 5'ss of exon 3
GCACCTTCTTGTTCAGAAATCTATCCCAAAGGGATTGGTTTTTGTTGGGGAATTACCTTCTGGATCTAAAGGTGCTTTTAGTCCAAAAATGGATCACCTGgtatgtggttcgttttaactactttaagttaatctgttcaaa-gatcaatctaggtta---tggctacttaatttgtttttgagatcaggagattaagaaacag
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ACATCTTCTTGTTCGGAAATCAATTCCAAATGGACTAGTTTTTGTCGGAGAATTGCCTTATGGATCTAACAGTAATTTCAGCCCAAAAATGGATCACCTGgtatgcagtactttctaatt--ttcaagtttggcattgcatacaaatattttgtgctacagtagttgcttgagaatatcattaagtagaaatagtgcaaaag--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30134610|gb|CB919948.1|CB919948EST: AATTACCTTCTGGATCTAAAGGTGCTTTTAGTCCAAAAATGGATCACCTG GTCTGTTTCCTGCCTGGTACTCTTGCACTTGGT
genomic: AATTACCTTCTGGATCTAAAGGTGCTTTTAGTCCAAAAATGGATCACCTGgtatgtggtt ... ccctgtttagGTCTGTTTCCTGCCTGGTACTCTTGCACTTGGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCACCTTCTTGTTCAGAAATCTATCCCAAAGGGATTGGTTTTTGTTGGGGAATTACCTTCTGGATCTAAAGGTGCTTTTAGTCCAAAAATGGATCACCTGgtatgtggttcgttttaactactttaagttaatctgttcaaagatcaatctaggttatggctacttaatttgtttttgagatcaggagattaagaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caggaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - taagaaa