Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatctcatgttttcactgtcatgtggtatttgttggtgaaattattattgggattttggaagtatggttaaatgggggttgattcttggaggtgt...

Basic information

species Vitis vinifera
transcript Vv10s0003g03150.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g03150.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G10220.1 (Glycine max), 5'ss of exon 3
GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatctcatgttttcactgt----catgtggtatttgttggtgaaattattattgggattttggaag-tatggttaaatgggggttgattcttggaggtgt
||||||||||||||| || || || || |||||||||||||| |||||||| || ||||| |||||| | ||||| | |   ||  ||    | ||   ||||| ||  | | |||| | |  |||||||      |||||||    ||  |||||    |   | |  
GTATTTTCTGAGGAAACTGAAAAAGGTGAAGAAGAGCAATGGCCAAGTGCTTGCCATCAACGAGgta-caatctcctttaggcatagttttacttgctttatttttttct-atattaatgtacggattttattgcctatggttttg-ggaagttgaaaactatggtt--

upper sequence: Vv10s0003g03150.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G13270.1 (Glycine max), 5'ss of exon 3
GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatctcatgttttcactgtcatgtggtatttgttggtgaaattattattg--ggattttggaagtatggttaaatgggggttgattcttggaggtgt
 |||||  |||| ||||| ||||| |||||||| |||||||| ||| |||| || ||||||||||||   ||      |  || || | || |     ||        | | | ||| |  | |  |||  | || | |  |||     ||||  |||  || | |
-TATTTCTTGAGAAAGCTAAAGAAGGTCAAGAAAAGCAATGGCCAAATGCTAGCCATCAATGAGGtatgcattctcaatcgtc-ctatgatattcctctttacatcacagtgaatatagctgcaggttgctaataagctagaattctaattgaagcttaaagcttt
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30127989|gb|CB913328.1|CB913328
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|77577178|gb|DV217287.1|DV217287
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|71871567|gb|DT020622.1|DT020622
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|161709735|gb|FC058453.1|FC058453
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|110405774|gb|EC971324.1|EC971324
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|77583908|gb|DV220990.1|DV220990
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|77586588|gb|DV222419.1|DV222419
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|27583617|gb|CB006312.1|CB006312
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|161718472|gb|FC064804.1|FC064804
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|110376595|gb|EC941655.1|EC941655
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|30325289|gb|CD008551.1|CD008551
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|71866233|gb|DT015288.1|DT015288
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|77583161|gb|DV220615.1|DV220615
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|71872578|gb|DT021633.1|DT021633
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|71870661|gb|DT019716.1|DT019716
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|110387390|gb|EC952051.1|EC952051
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|110406102|gb|EC971661.1|EC971661
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|27578831|gb|CB001526.1|CB001526
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|110374615|gb|EC939502.1|EC939502
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|27583292|gb|CB005987.1|CB005987
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|87584790|gb|DY473816.1|DY473816
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|18459373|gb|BM437651.1|BM437651
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|30325604|gb|CD008866.1|CD008866
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|87584933|gb|DY473902.1|DY473902
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|110410770|gb|EC976462.1|EC976462
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|77585012|gb|DV221590.1|DV221590
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|71870822|gb|DT019877.1|DT019877
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|83276687|gb|DV940695.1|DV940695
EST:     GAAAGTCAAGAAGAGCAATGGTCAAGTGTTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: GAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|71875989|gb|DT025044.1|DT025044
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|77584511|gb|DV221320.1|DV221320
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|27580506|gb|CB003201.1|CB003201
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|30133386|gb|CB918725.1|CB918725
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|351026970|gb|FQ436623.1|FQ436623
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|110409711|gb|EC975381.1|EC975381
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|77577870|gb|DV217685.1|DV217685
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|77584342|gb|DV221243.1|DV221243
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|71871530|gb|DT020585.1|DT020585
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|110689267|gb|EE065344.1|EE065344
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTGGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|27580390|gb|CB003085.1|CB003085
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|110358381|gb|EC922551.1|EC922551
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|51050597|gb|CO818632.1|CO818632
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|71875022|gb|DT024077.1|DT024077
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|110695933|gb|EE074518.1|EE074518
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
EST: gi|110684627|gb|EE062118.1|EE062118
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatct ... gtcactgcagATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaactatctcatgttttcactgtcatgtggtatttgttggtgaaattattattgggattttggaagtatggttaaatgggggttgattcttggaggtgt

- - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtgaaa