Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatatcatgttgttttcactgttatgcgatacttgttgttgaaattattattgagattctttgaggtgtgtccatgagttgcatccattgtttgg...

Basic information

species Vitis vinifera
transcript Vv10s0003g03130.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g03130.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G10220.1 (Glycine max), 5'ss of exon 3
GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatatcatgttgttttcactgt-tatgcgatacttgttgttgaaattattattgagattctttgaggtgtgtccatg---agttgcatccattgtttgg
||||||||||||||| || || || || |||||||||||||| |||||||| || ||||| |||||| | || || | | |   |   | |   |||  || || ||  | | |||| | |   |||| | |    | ||    ||   ||||| |  |  || ||  
GTATTTTCTGAGGAAACTGAAAAAGGTGAAGAAGAGCAATGGCCAAGTGCTTGCCATCAACGAGgta-caatctcctttaggcatagttttacttgctttatttttttct-atattaatgtacggattttattgcctatggttttgggaagttgaaaactatggtt--

upper sequence: Vv10s0003g03130.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G13270.1 (Glycine max), 5'ss of exon 3
GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatatcatgttgtttt-cactgttatgcgatacttgttgttgaaattattattgagattctt-tgaggtgtgtccatgagttgcatccattgtttgg
 |||||  |||| ||||| ||||| |||||||| |||||||| ||| |||| || ||||||||||||  |||      | ||  |    | ||   |  ||| |     ||||  ||       | | ||  | || |       | | |       |  | ||  
-TATTTCTTGAGAAAGCTAAAGAAGGTCAAGAAAAGCAATGGCCAAATGCTAGCCATCAATGAGGtatgcattctcaatcgtcctatgatattcctctttacatcacagtgaatatagctgcaggttgctaataagctagaattctaattgaagcttaaagcttt-
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71871250|gb|DT020305.1|DT020305
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|110706824|gb|EE082690.1|EE082690
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|351020339|gb|FQ445946.1|FQ445946
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAAAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|71867935|gb|DT016990.1|DT016990
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|349813933|gb|FQ414167.1|FQ414167
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|110383230|gb|EC947588.1|EC947588
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|30328166|gb|CD011428.1|CD011428
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|351022806|gb|FQ428715.1|FQ428715
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|110371329|gb|EC935267.1|EC935267
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|71873088|gb|DT022143.1|DT022143
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|110695039|gb|EE072600.1|EE072600
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|30322555|gb|CD005817.1|CD005817
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|110706856|gb|EE082750.1|EE082750
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|110413595|gb|EC979387.1|EC979387
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|349825489|gb|FQ419406.1|FQ419406
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|349816020|gb|FQ403637.1|FQ403637
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|110707425|gb|EE083816.1|EE083816
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|27581974|gb|CB004669.1|CB004669
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|110702593|gb|EE081118.1|EE081118
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|30323910|gb|CD007172.1|CD007172
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|110365491|gb|EC928562.1|EC928562
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|110389914|gb|EC954788.1|EC954788
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|87584263|gb|DY473493.1|DY473493
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|37188354|gb|CF607703.1|CF607703
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|110708792|gb|EE086737.1|EE086737
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|110691642|gb|EE069976.1|EE069976
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|71865522|gb|DT014577.1|DT014577
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|34416996|gb|CF415750.1|CF415750
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|351027831|gb|FQ448401.1|FQ448401
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|110715252|gb|EE093093.1|EE093093
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|37188715|gb|CF608064.1|CF608064
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|37190352|gb|CF609701.1|CF609701
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|71890777|gb|DT039832.1|DT039832
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|77586590|gb|DV222421.1|DV222421
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|110373629|gb|EC937883.1|EC937883
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|34319239|gb|CF371993.1|CF371993
EST:     GTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGACCCCAA-CACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: GTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|71875042|gb|DT024097.1|DT024097
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|33404943|gb|CF210570.1|CF210570
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|77586925|gb|DV222609.1|DV222609
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|30326584|gb|CD009846.1|CD009846
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|110715137|gb|EE092842.1|EE092842
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|30326958|gb|CD010220.1|CD010220
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGCTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|30251436|gb|CB969169.1|CB969169
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|351028650|gb|FQ446323.1|FQ446323
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|71877094|gb|DT026149.1|DT026149
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|349827194|gb|FQ421467.1|FQ421467
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|110703310|gb|EE080042.1|EE080042
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|77582145|gb|DV220031.1|DV220031
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|110378157|gb|EC943276.1|EC943276
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAATTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|110692176|gb|EE071118.1|EE071118
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|110410603|gb|EC976291.1|EC976291
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
EST: gi|352781424|gb|FQ468268.1|FQ468268
EST:     AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAG                         ATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG
genomic: AGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatat ... gtcgctgcagATTTTTGAGAAGAACCCAACCACAATCAAGAACTATGGGATTTGGTTGCGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATTTTCTGAGGAAGCTTAAGAAAGTCAAGAAGAGCAATGGTCAAGTGCTGGCAATCAATGAGgtaaccatatcatgttgttttcactgttatgcgatacttgttgttgaaattattattgagattctttgaggtgtgtccatgagttgcatccattgtttgg

- - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - AGAGCA