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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATCATGGAGATGAAATCTGTGGAGCAGTGATCAATGTCAGAGCTAGACAGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaattttataaattaatctgcattttctgaggttgtcctaactattatgttttggtttatttaacatgttttaatgagtgacaattgaattatt...

Basic information

species Vitis vinifera
transcript Vv10s0003g02250.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g02250.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G29420.1 (Glycine max), 5'ss of exon 3
TGATCATGGAGATGAAATCTGTGGAGCAGTGATCAATGTCAGAGCTAGACAGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaattttataaattaatctgcattttctgaggttgtcctaactattatgttttggtttatttaacatgttttaatgagtgacaatt-gaattatt-
|||||| ||||||||||| |||||||| ||  | |||||||||  ||| ||||| ||||| ||| | ||||| ||||| |||||||||||||||||||||||  |  | | ||    ||| || |      |  |   |||   |   | |    |||   ||||||||  ||  |     | |||  |  | |    ||| 
TGATCACGGAGATGAAATATGTGGAGCTGTTGTGAATGTCAGAAGTAGGCAGGATAAAATTGCTATTTGGACTAAGAACGCTTCAAATGAAGCTGCTCAGgtgac--attctttcttatttatttattcagttagtttttgctttgtttctgtcttttccctttatttactattgtgctgcgggtgggaggtagggagattt

upper sequence: Vv10s0003g02250.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G09630.2 (Glycine max), 5'ss of exon 3
TGATCATGGAGATGAAATCTGTGGAGCAGTGATCAATGTCAGAGCTAGACAGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaattttataaattaatctgcattttctgaggttgtcctaactattatgttttggtttatttaacatgttttaatgagtgacaattgaattatt---
|||||| ||||||||||| || ||||| ||  | |||||||||  ||| ||||| ||||| ||| | ||||| ||||| |||||||||||||||||||||||| |  | |  |||  ||| |  |   |||  |  | || |  |      | |||||    || |    || ||   |  ||||||     || ||||    
TGATCACGGAGATGAAATATGCGGAGCTGTTGTGAATGTCAGAAGTAGGCAGGAAAAAATTGCTATTTGGACTAAGAACGCTTCAAATGAAGCTGCTCAGgtaac--attcctatttattcagttagttttggtttgtttctttttttccctttgtttactattgtgctgcaggtgggagggagtgaggga-gatttatctag

upper sequence: Vv10s0003g02250.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT4G18040.1 (Arabidopsis thaliana), 5'ss of exon 3
TGATCATGGAGATGAAATCTGTGGAGCAGTGATCAATGTCAGAGCTAGACAGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaattttataaattaatctgcattttctgaggttgtcctaactattatgttttggtttatttaacatgttttaatgagtgacaat-tgaattatt----
|||||||||||||||||| |||||||||||  ||||  | ||||  |  || || |  ||| || | ||||| || ||||||||||| |||||||||||||||  || |      |||   | ||   |  ||  |  |  ||  ||  | | | | |  ||  |  ||| |   ||||||    | |    | || | ||    
TGATCATGGAGATGAAATATGTGGAGCAGTTGTCAACATTAGAGGAAAGCAAGAAAGGATATCTATTTGGACTAAAAATGCTTCAAACGAAGCTGCTCAGgtaaataga------aaa--gacctttctcatcaaaactcatc--aaacagtctctctgtgtaaaaataagac--tttaattctcgtctgcatcaaatgttgcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|26262433|gb|CA813496.1|CA813496
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATGGGAAAACAATGGAAGGA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGA
EST: gi|351030478|gb|FQ432416.1|FQ432416
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|351043287|gb|FQ444008.1|FQ444008
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|351024812|gb|FQ430637.1|FQ430637
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|77585822|gb|DV222012.1|DV222012
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAA
EST: gi|30129785|gb|CB915124.1|CB915124
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|110718702|gb|EE095839.1|EE095839
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGGATTTCCGGATTACAGCGAA-GCTTA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|18459494|gb|BM437772.1|BM437772
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCT
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCT
EST: gi|33403709|gb|CF209336.1|CF209336
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|351041261|gb|FQ447388.1|FQ447388
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|351013219|gb|FQ424924.1|FQ424924
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|77586851|gb|DV222569.1|DV222569
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAG
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAG
EST: gi|349830175|gb|FQ420435.1|FQ420435
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|32245049|gb|CD710868.1|CD710868
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|110401164|gb|EC967763.1|EC967763
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|110372842|gb|EC937036.1|EC937036
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|30126189|gb|CB911528.1|CB911528
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|110370659|gb|EC930270.1|EC930270
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|110729229|gb|EE105336.1|EE105336
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|32245302|gb|CD711121.1|CD711121
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|351027029|gb|FQ439889.1|FQ439889
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|161712276|gb|FC061899.1|FC061899
EST:     AGGAGAATATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACA-TGGAAGGAATTTC
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTC
EST: gi|110722220|gb|EE098261.1|EE098261
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAA                         CTGAGCATTGGAAAACAATGGAAGGGATTTTTTGGATTACAGCGAAAGCAT
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCT-GGATTACAGCGAAAGCAT
EST: gi|110720594|gb|EE096655.1|EE096655
EST:     GGAGAAAATAGCTCTATGGGACCA-GAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAGACAATG
genomic: GGAGAAAATAGCTCTATGG-ACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATG
EST: gi|349809854|gb|FQ398479.1|FQ398479
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|26263843|gb|CA814906.1|CA814906
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|27578982|gb|CB001677.1|CB001677
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCT
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCT
EST: gi|351012448|gb|FQ427049.1|FQ427049
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|27583054|gb|CB005749.1|CB005749
EST:     AGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|349825143|gb|FQ415690.1|FQ415690
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|110402114|gb|EC968749.1|EC968749
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|110713254|gb|EE089012.1|EE089012
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACCATGGAAG-AATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|110367998|gb|EC931958.1|EC931958
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|110401693|gb|EC968309.1|EC968309
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|161715411|gb|FC066473.1|FC066473
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACA-TGGAAAGGA-TTTCTGGATTACAGCGAAAGCAT
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAA-GGAATTTCTGGATTACAGCGAAAGCAT
EST: gi|110426279|gb|EC992681.1|EC992681
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|110360035|gb|EC922556.1|EC922556
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|30134592|gb|CB919930.1|CB919930
EST:     AGGAGAAAATAGCTCTATGGACCA-GAATGCTTCAA-TGAAGCTGCTCAG                         CTGAGCATTGGAAA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAA
EST: gi|351030954|gb|FQ438990.1|FQ438990
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|351012919|gb|FQ430482.1|FQ430482
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
EST: gi|27581098|gb|CB003793.1|CB003793
EST:     AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAG                         CTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA
genomic: AGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaat ... cttgttgcagCTGAGCATTGGAAAACAATGGAAGGAATTTCTGGATTACAGCGAAAGCATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGATCATGGAGATGAAATCTGTGGAGCAGTGATCAATGTCAGAGCTAGACAGGAGAAAATAGCTCTATGGACCAAGAATGCTTCAAATGAAGCTGCTCAGgtagctaaattttataaattaatctgcattttctgaggttgtcctaactattatgttttggtttatttaacatgttttaatgagtgacaattgaattatt

- - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaattaa