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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTAAATCAACAATTGAGAGGTATAAGAAGGCAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgtttcattaactccttatgctgatgggagttgttatttccatggaaagattgataaaagcttcttccatttgatgtgaattaatggttgcactt...

Basic information

species Vitis vinifera
transcript Vv10s0003g02070.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110383648|gb|EC948031.1|EC948031
EST:     CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAG                         TTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
genomic: CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgttt ... tacatctcagTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
EST: gi|110712532|gb|EE090261.1|EE090261
EST:     CAAGCGCAGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAG                         TTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
genomic: CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgttt ... tacatctcagTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
EST: gi|110712239|gb|EE089632.1|EE089632
EST:     CAAGCGCAGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAG                         TTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
genomic: CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgttt ... tacatctcagTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
EST: gi|110711522|gb|EE088099.1|EE088099
EST:     CAAGCGCAGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAG                         TTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
genomic: CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgttt ... tacatctcagTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
EST: gi|110711652|gb|EE088373.1|EE088373
EST:     CAAGCGCAGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAG                         TTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
genomic: CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgttt ... tacatctcagTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
EST: gi|71882431|gb|DT031486.1|DT031486
EST:     CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAG                         TTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
genomic: CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgttt ... tacatctcagTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
EST: gi|110713092|gb|EE088709.1|EE088709
EST:     CAAGCGCAGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAG                         TTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
genomic: CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgttt ... tacatctcagTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
EST: gi|110711884|gb|EE088869.1|EE088869
EST:     CAAGCGCAGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAG                         TTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
genomic: CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgttt ... tacatctcagTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
EST: gi|110713523|gb|EE089518.1|EE089518
EST:     CAAGCGCAGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAG                         TTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
genomic: CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgttt ... tacatctcagTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
EST: gi|110711970|gb|EE089059.1|EE089059
EST:     CAAGCGCAGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAG                         TTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
genomic: CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgttt ... tacatctcagTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
EST: gi|110712904|gb|EE088360.1|EE088360
EST:     CAAGCGCAGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAG                         TTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
genomic: CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgttt ... tacatctcagTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
EST: gi|71865131|gb|DT014186.1|DT014186
EST:     CAAGCGCAGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAG                         TTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
genomic: CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgttt ... tacatctcagTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
EST: gi|110712651|gb|EE087883.1|EE087883
EST:     CAAGCGCAGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAG                         TTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
genomic: CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgttt ... tacatctcagTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
EST: gi|38516653|gb|CF983828.1|CF983828
EST:     CAAGCGCAGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAG                         TTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
genomic: CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgttt ... tacatctcagTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
EST: gi|110408486|gb|EC974122.1|EC974122
EST:     CAAGCGCAGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAG                         TTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
genomic: CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgttt ... tacatctcagTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
EST: gi|110723223|gb|EE100293.1|EE100293
EST:     CAAGCGCAGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAG                         TTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
genomic: CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgttt ... tacatctcagTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
EST: gi|110692821|gb|EE068512.1|EE068512
EST:     CAAGCGCAGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAG                         TTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
genomic: CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgttt ... tacatctcagTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
EST: gi|110710861|gb|EE087398.1|EE087398
EST:     CAAGCGCAGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAACGCTCAG                         TTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
genomic: CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgttt ... tacatctcagTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
EST: gi|33404091|gb|CF209718.1|CF209718
EST:     CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAG                         TTCTACCAGCAAGAATCCTCCCAACTGCATCAGCAGATTCGTAATTTGCAG
genomic: CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgttt ... tacatctcagTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
EST: gi|110394353|gb|EC959175.1|EC959175
EST:     CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAG                         TTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
genomic: CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgttt ... tacatctcagTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
EST: gi|71882673|gb|DT031728.1|DT031728
EST:     CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAG                         TTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
genomic: CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgttt ... tacatctcagTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
EST: gi|71865157|gb|DT014212.1|DT014212
EST:     CAAGCGCAGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAG                         TTCTACCAGCAAGAATCCTCCAAACTGCATCAGCGGATTCGTAATTTGCAG
genomic: CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgttt ... tacatctcagTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
EST: gi|110713543|gb|EE089566.1|EE089566
EST:     CAAGCGCAGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAG                         TTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
genomic: CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgttt ... tacatctcagTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
EST: gi|110719625|gb|EE094917.1|EE094917
EST:     CAAGCGCAGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAG                         TTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG
genomic: CAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgttt ... tacatctcagTTCTACCAGCAAGAATCCTCCAAACTGCATCAGCAGATTCGTAATTTGCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTAAATCAACAATTGAGAGGTATAAGAAGGCAAGCGCTGATTCCTCCAACACCGGGTCCGTTTCTGAAGCCAATGCTCAGgtgtgtgtttcattaactccttatgctgatgggagttgttatttccatggaaagattgataaaagcttcttccatttgatgtgaattaatggttgcactt

- - - - - - - - - - - - - - - - - -  GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gataaaa