1 5' 3' | 2 5' 3' | 3 5' 3' |
TAGCCAGGCCAAGGAGATGTTAGACCATCTAGAAAGTGTGCTAGCAAATGAACCTGTTGCTGTGAAAAGTGGTCAATTCATTGTAGAAGTGAAGCCACAGgtaccccttatatgtcaactacatttttgttttcatacttatattctacatgaatgcaatttcctgatacttttttttttttgataagtaatagcaattg...
species | Vitis vinifera |
transcript | Vv10s0003g01680.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: AACCTGTTGCTGTGAAAAGTGGTCAATTCATTGTAGAAGTGAAGCCACAG GGCATCAGTAAAGGTGTGGATGCGGAAAAGATCTTCACTTCAATGGCAGAGEST: gi|71863376|gb|DT012431.1|DT012431
genomic: AACCTGTTGCTGTGAAAAGTGGTCAATTCATTGTAGAAGTGAAGCCACAGgtacccctta ... tggcttatagGGCATCAGTAAAGGTGTGGTTGCGGAAAAGATCTTCACTTCAATGGCAGAG
EST: AACCTGTTGCTGTGAAAAGTGGTCAATTCATTGTAGAAGTGAAGCCACAG GGCATCAGTAAAGGTGTGGTTGCGGAAAAGATCTTCACTTCAATGGCAGAGEST: gi|110418120|gb|EC984239.1|EC984239
genomic: AACCTGTTGCTGTGAAAAGTGGTCAATTCATTGTAGAAGTGAAGCCACAGgtacccctta ... tggcttatagGGCATCAGTAAAGGTGTGGTTGCGGAAAAGATCTTCACTTCAATGGCAGAG
EST: AACCTGTTGCTGTGAAAAGTGGTCAATTCATTGTAGAAGTGAAGCCACAG GGCATCAGTAAAGGTGTGGTTGCGGAAAAGATCTTCACTTCAATGGCAGAGEST: gi|33405476|gb|CF211103.1|CF211103
genomic: AACCTGTTGCTGTGAAAAGTGGTCAATTCATTGTAGAAGTGAAGCCACAGgtacccctta ... tggcttatagGGCATCAGTAAAGGTGTGGTTGCGGAAAAGATCTTCACTTCAATGGCAGAG
EST: AACCTGTTGCTGTGAAAAGTGGTCAATTCATTGTAGAAGTGAAGCCACAG GGCATCAGTAAAGGTGTGGTTGCGGAAAAGATCTTCACTTCAATGGCAGAGEST: gi|30296751|gb|CB973545.1|CB973545
genomic: AACCTGTTGCTGTGAAAAGTGGTCAATTCATTGTAGAAGTGAAGCCACAGgtacccctta ... tggcttatagGGCATCAGTAAAGGTGTGGTTGCGGAAAAGATCTTCACTTCAATGGCAGAG
EST: AACCTGTTGCTGTGAAAAGTGGTCAATTCATTGTAGAAGTGAAGCCACAG GGCATCAGTAAAGGTGTGGTTGCGGAAAAGATCTTCACTTCAATGGCAGAG
genomic: AACCTGTTGCTGTGAAAAGTGGTCAATTCATTGTAGAAGTGAAGCCACAGgtacccctta ... tggcttatagGGCATCAGTAAAGGTGTGGTTGCGGAAAAGATCTTCACTTCAATGGCAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAGCCAGGCCAAGGAGATGTTAGACCATCTAGAAAGTGTGCTAGCAAATGAACCTGTTGCTGTGAAAAGTGGTCAATTCATTGTAGAAGTGAAGCCACAGgtaccccttatatgtcaactacatttttgttttcatacttatattctacatgaatgcaatttcctgatacttttttttttttgataagtaatagcaattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatagcaa