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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTATGTCTAGCGTGGGCTTATCGGGAACCCTTTCTCCCAGTATTGGGAATTTGAGTCATCTCCGTTCATTgtaagcttattctgttattattattttttctttttcttcacaacttctattgcaaatttggttaaatgttttctgagtttggaatcattgggcaattatc...

Basic information

species Vitis vinifera
transcript Vv10s0003g01490.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38516696|gb|CF983871.1|CF983871
EST:     TCGGGAACCCTTTCTCCCAGTATTGGGAATTTGAGTCATCTCCGTTCATT                         GTGGTTACAGAACAATCAATTATCTGGTCCTATCCCTGTTGAGATTGGGAA
genomic: TCGGGAACCCTTTCTCCCAGTATTGGGAATTTGAGTCATCTCCGTTCATTgtaagcttat ... aaccttgcagGTGGTTACAGAACAATCAATTATCTGGTCCTATCCCTGTTGAGATTGGGAA
EST: gi|110713153|gb|EE088826.1|EE088826
EST:     TCGGGAACCCTTTCTCCCAGTATTGGGAATTTGAGTCATCTCCGTTCATT                         GTGGTTACAGAACAATCAATTATCTGGTCCTATCCCTGTTGAGATTGGGAA
genomic: TCGGGAACCCTTTCTCCCAGTATTGGGAATTTGAGTCATCTCCGTTCATTgtaagcttat ... aaccttgcagGTGGTTACAGAACAATCAATTATCTGGTCCTATCCCTGTTGAGATTGGGAA