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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAACATACAGCACACAGATTTTCTCCTTGGCTGTCCTTTTATCTAGTATGTTCATATACAACCAGgttggtacatcatatgctcaagttgtggacaaggattggttgtgggatttagtagacagtttctttttattgaaatttgatctattttgtgttttctcctcacaatcagcatgcattgtgtatcatgtccataaattctgttgtatgggttcttgattcttctgcctatttacgttcttccttccattcag

Basic information

species Vitis vinifera
transcript Vv10s0003g00370.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g00370.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G30780.1 (Glycine max), 5'ss of exon 3
GGAACATACAGCACACAGATTTTCTCCTTGGCTGTCCTTTTATCTAGTATGTTCATATACAACCAGgttggtacatcatatgctcaagttgtggacaaggattggttgtgggatttagtagacagtttctttttattgaaatttgatctattttgtgttttctcctcacaatcagcatgcattgtgtatcatgtccataaattctgttgtatgggttcttgattcttctgcctatttacgttcttccttccattcag
|||||||||||||| ||||| |||||||| ||||||||||| ||||| |||||||| || |||||||||||  || |  |||    | |  |  |      || ||  |   ||| ||    |  || ||| |   |   ||||||| |  ||   | ||  |   ||   |  |  | || |    | |||    ||  ||||  |  | |   || |  |                                   
GGAACATACAGCACCCAGATCTTCTCCTTAGCTGTCCTTTTGTCTAGCATGTTCATTTATAACCAGgttggggcaactcatg---gaatcctatat-----ttagtcata--attgagagtgcttttacttctccatattatttgattt--ttaacgattagtgaccagtttgtgggtccactaccgagcatacaaatttattccctcttctctcttgtctag----------------------------------

upper sequence: Vv10s0003g00370.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G32290.2 (Glycine max), 5'ss of exon 3
GGAACATACAGCACACAGATTTTCTCCTTGGCTGTCCTTTTATCTAGTATGTTCATATACAACCAGgttggtacatcatat----gctcaagttgtggaca-aggattggttgtgggatttagtagacagtttctttttattgaaatttgat--ctattttgtgttttctcctcacaatcagcatgca-ttgtgtatcatgtccataaattctgttgtatgggttcttgattct--tctgcctatttacgttcttccttccattcag
|||||||||||||| ||||| ||||| ||||| || ||||| ||||| |||||||| || ||||||||||| ||| | |||    |   |  || | |    |  |||| ||||    |||        |||||||  | || | || | ||   |  |||| |  |       | |   ||| || |  | | |  | | | | |        || | ||  ||  |   |    |  |  |  | | | | || |||    ||||
GGAACATACAGCACCCAGATATTCTCATTGGCAGTTCTTTTGTCTAGCATGTTCATTTATAACCAGgttggcacagcctattcaagtctatattttcgttgtataattgcttgtat--ttttactttttgtttcttggtttttacatctcatgatttatttgcgagtctgttatagagcaagcgtgaaactttattccttcttcttcttgcaacttttgtgaatttcttgctgcaattggaatgctgatgctatttcttttgctcag

upper sequence: Vv10s0003g00370.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G08490.1 (Glycine max), 5'ss of exon 5
GGAACATACAGCACACAGATTTTCTCCTTGGCTGTCCTTTTATCTAGTATGTTCATATACAACCAGgttggtacatcatatgctcaagttgtggacaaggattggttgtgggatttagtagacagtttctttttattgaaatttgatctattttgtgttttctcctcacaatcagcatgcattgtgtatcatgtccataaattctgttgtatgggttcttgattcttctgcctatttacgttcttccttccattcag
       ||||||| ||||| ||||| ||  |||||||||| ||||| | |||||| ||||||||||||||   | | ||||   |||         |||  |  ||| | |   |  ||       |  | |||||  | ||||| |  ||| |                                                                                                      
-------ACAGCACCCAGATATTCTCATTAACTGTCCTTTTGTCTAGCAAGTTCATTTACAACCAGGTTGGGGAAGCTTATGG--AAGCCTATATTTAGGCATAATTGAgtgtgctttta------cttctattatttgattttgagc-gtttag------------------------------------------------------------------------------------------------------

upper sequence: Vv10s0003g00370.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G24260.1 (Glycine max), 5'ss of exon 3
GGAACATACAGCACACAGATTTTCTCCTTGGCTGTCCTTTTATCTAGTATGTTCATATACAACCAGgttggtaca-tcatatgctcaagttgtggacaaggattggttgtgggatttagtagacagtttctttttattgaaatttgatctattttgtgttttctcctcacaatcagcatgcattgtgtatcatgtccataaattctgttgtatgggttcttgattcttctgcctatttacgttcttccttccattcag
|| ||||||||||| ||||| |||||  |||| || ||||| ||||| |||||||| || ||||||||||| |||  | ||     | ||  |      |  || | |||     | | |   |   ||  || ||  | |||  |    | ||| |   |||| ||| |   |||| |   ||||| ||    | |   ||||  |    |  | | ||   || || |||  |                       
GGCACATACAGCACCCAGATATTCTCACTGGCAGTTCTTTTGTCTAGCATGTTCATTTATAACCAGgttggcacaaccttacttatatgtgtttcttgggttttagatgtcatgatcaatttgcgagtttgttatagagcaatgcgtgaaactttattccttcttctc-ctcccagctt---ttgtgaatttcttgctgcaatt--ggaacactgatgct-attttttttgctcag----------------------

upper sequence: Vv10s0003g00370.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S139_74V6.1 (Physcomitrella patens), 5'ss of exon 3
GGAACATACAGCACACAGATTTTCTCCTTGGCTGTCCTTTTATCTAGTATGTTCATATACAACCAGgttggtacatcatatgctcaagttgtggacaaggattggttgtgggatttagtagacagtttctttttattgaaatttgatctattttgtgttttctcctcacaatcagcatgcattgtgtatcatgtccataaattctgttgtatgggttcttgattcttctgcctatttacgttcttccttccattcag
||||||||||||||||| || ||||||||||||||  | ||||| || |||||| |||| || |||||  || |         |||  |  |  |      ||  || |   |||||  |    |    |  |   ||||         || |  |   | |   |||||   |                                                                                   
GGAACATACAGCACACAAATCTTCTCCTTGGCTGTTTTGTTATCAAGCATGTTCGTATATAATCAGgtcagtgctatgccca-tcatttccttaagtgatgttcctttttacattta--aactggaggatgctggctgaa--------catctgatagctccgaatcacagctactg--------------------------------------------------------------------------------