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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAACGAGAAGCTGCAATGGTTTCTTGATGCTGTAAAGGCACATCCCAATGAGCTGAAGCTTGTGGGGGCCCATTGCCATCTTGGGTCTACCATTACCAAGgtatgtcattgactttcttcctttcgttttttttttactatgatttttcaaagttgacttgagttaaacaaagctttttctgttatttgatgattacttg...

Basic information

species Vitis vinifera
transcript Vv09s0070g00580.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351016766|gb|FQ424193.1|FQ424193
EST:     AGCTGAAGCTTGTGGGGGCCCATTGCCATCTTGGGTCTACCATTACCAAG                         GTGGACATATTTAGGGATGCTGCAGTTCTTATGGGCAACTACATTGACGAA
genomic: AGCTGAAGCTTGTGGGGGCCCATTGCCATCTTGGGTCTACCATTACCAAGgtatgtcatt ... ttattttcagGTGGACATATTTAGGGATGCTGCAGTTCTTATGGTCAACTACATTGATGAA
EST: gi|30130303|gb|CB915642.1|CB915642
EST:     CTACCATTACCAAA                         GTGGACATATTTAGGGATGCTGCAGTTCTTATGGTCAACTACATTGACGAA
genomic: CTACCATTACCAAGgtatgtcatt ... ttattttcagGTGGACATATTTAGGGATGCTGCAGTTCTTATGGTCAACTACATTGATGAA
EST: gi|349825530|gb|FQ419447.1|FQ419447
EST:     AGCTGAAGCTTGTGGGGGCCCATTGCCATCTTGGGTCTACCATTACCAAG                         GTGGACATATTTAGGGATGCTGCAGTTCTTATGGTCAACTACATTGACGAA
genomic: AGCTGAAGCTTGTGGGGGCCCATTGCCATCTTGGGTCTACCATTACCAAGgtatgtcatt ... ttattttcagGTGGACATATTTAGGGATGCTGCAGTTCTTATGGTCAACTACATTGATGAA
EST: gi|351012479|gb|FQ427080.1|FQ427080
EST:     AGCTGAAGCTTGTGGGGGCCCATTGCCATCTTGGGTCTACCATTACCAAG                         GTGGACATATTTAGGGATG
genomic: AGCTGAAGCTTGTGGGGGCCCATTGCCATCTTGGGTCTACCATTACCAAGgtatgtcatt ... ttattttcagGTGGACATATTTAGGGATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AAACGAGAAGCTGCAATGGTTTCTTGATGCTGTAAAGGCACATCCCAATGAGCTGAAGCTTGTGGGGGCCCATTGCCATCTTGGGTCTACCATTACCAAGgtatgtcattgactttcttcctttcgttttttttttactatgatttttcaaagttgacttgagttaaacaaagctttttctgttatttgatgattacttg

- - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - -  TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacaaa