Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATTAGACCTGATCCAAATGAAGCATAGGGGAAAAAAGCGAAAACTATCATTGGAAACATTAGACTCCAAACTGCTTTTTGTCATTCGCATACAGGGgttggttactaatattgtgattttgagggtttcctctatattttttgttattgcctcttcagattttgatcttcccaaattattttcag

Basic information

species Vitis vinifera
transcript Vv09s0070g00130.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110424125|gb|EC990481.1|EC990481
EST:     TCATTGGAAACATTAGACTCCAAACTGCTTTTTGTCATTCGCATACAGGG                         CAAAAATGATATGCATCCAAAGACTAGGAAGATCTTATACTTTTTGAGATT
genomic: TCATTGGAAACATTAGACTCCAAACTGCTTTTTGTCATTCGCATACAGGGgttggttact ... ttattttcagCAAAAATGATATGCATCCAAAGACTAGGAAGATCTTATACTTTTTGAGATT
EST: gi|110707697|gb|EE084394.1|EE084394
EST:     TCATTGGAAACATTAGACTCCAAACTGCTTTTTGTCATTCGCATACAGGG                         CAAAAATGATATGCATCCAAAGACTAGGAAGATCTTATACTTTTTGAGATT
genomic: TCATTGGAAACATTAGACTCCAAACTGCTTTTTGTCATTCGCATACAGGGgttggttact ... ttattttcagCAAAAATGATATGCATCCAAAGACTAGGAAGATCTTATACTTTTTGAGATT
EST: gi|110729308|gb|EE105444.1|EE105444
EST:     TCATTGGAAACATTAGACTCCAAACTGCTTTTTGTCATTCGCATACAGGG                         CAAAAATGATATGCATCCAAAGACTAGGAAGATCTTATACTTTTTGAGATT
genomic: TCATTGGAAACATTAGACTCCAAACTGCTTTTTGTCATTCGCATACAGGGgttggttact ... ttattttcagCAAAAATGATATGCATCCAAAGACTAGGAAGATCTTATACTTTTTGAGATT
EST: gi|110723130|gb|EE100088.1|EE100088
EST:     TCATTGGAAACATTAGACTCCAAACTGCTTTTTGTCATTCGCATACAGGG                         CAAAAATGATATGCATCCAAAGACTAGGAAGATCTTATACTTTTTGAGATT
genomic: TCATTGGAAACATTAGACTCCAAACTGCTTTTTGTCATTCGCATACAGGGgttggttact ... ttattttcagCAAAAATGATATGCATCCAAAGACTAGGAAGATCTTATACTTTTTGAGATT
EST: gi|71858171|gb|DT007226.1|DT007226
EST:     TCATTGGAAACATTAGACTCCAAACTGCTTTTTGTCATTCGCATACAGGG                         CAAAAATGATATGCATCCAAAGACTAGGAAGATCTTATACTTTTTGAGATT
genomic: TCATTGGAAACATTAGACTCCAAACTGCTTTTTGTCATTCGCATACAGGGgttggttact ... ttattttcagCAAAAATGATATGCATCCAAAGACTAGGAAGATCTTATACTTTTTGAGATT
EST: gi|32245909|gb|CD711728.1|CD711728
EST:     GGAAACATTAGACTCCAAACTGCTTTTTGTCATTCGCATACAGGG                         CAAAAATGATATGCATCCAAAGACTAGGAAGATCTTATACTTTTTGAGATT
genomic: GGAAACATTAGACTCCAAACTGCTTTTTGTCATTCGCATACAGGGgttggttact ... ttattttcagCAAAAATGATATGCATCCAAAGACTAGGAAGATCTTATACTTTTTGAGATT
EST: gi|110702626|gb|EE078762.1|EE078762
EST:     TCATTGGAAACATTAGACTCCAAACTGCTTTTTGTCATTCGCATACAGGG                         CAAAAATGATATGCATCCAAAGACTAGGAAGATCTTATACTTTTTGAGATT
genomic: TCATTGGAAACATTAGACTCCAAACTGCTTTTTGTCATTCGCATACAGGGgttggttact ... ttattttcagCAAAAATGATATGCATCCAAAGACTAGGAAGATCTTATACTTTTTGAGATT
EST: gi|30134184|gb|CB919522.1|CB919522
EST:     TCATTGGAAACATTAGACTCCAAACTGCTTTTTGTCATTCGCATACAGGG                         CAAAAATGATATGCATCCAAAGACTAGGAAGATCTTATACTTTTTGAGATT
genomic: TCATTGGAAACATTAGACTCCAAACTGCTTTTTGTCATTCGCATACAGGGgttggttact ... ttattttcagCAAAAATGATATGCATCCAAAGACTAGGAAGATCTTATACTTTTTGAGATT
EST: gi|161710238|gb|FC058954.1|FC058954
EST:     TCATTGGAAACATTAGACTCCAAACTGCTTTTTGTCATTCGCATACAGGG                         CAAAAATGATATGCATCCAAAGACTAGGAAGATCTTATACTTTTTGAGATT
genomic: TCATTGGAAACATTAGACTCCAAACTGCTTTTTGTCATTCGCATACAGGGgttggttact ... ttattttcagCAAAAATGATATGCATCCAAAGACTAGGAAGATCTTATACTTTTTGAGATT
EST: gi|110731600|gb|EE106153.1|EE106153
EST:     TCATTGGAAACATTAGACTCCAAACTGCTTTTTGTCATTCGCATACAGGG                         CAAAAATGATATGCATCCAAAGACTAGGAAGATCTTATACTTTTTGAGATT
genomic: TCATTGGAAACATTAGACTCCAAACTGCTTTTTGTCATTCGCATACAGGGgttggttact ... ttattttcagCAAAAATGATATGCATCCAAAGACTAGGAAGATCTTATACTTTTTGAGATT