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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAAAGGAGCTGATTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGGgtatgcacttggactatagttatttccattgatacctttactttcatattaatattctggttctcattcctgttcactctggaactttcagtatcaatgc...

Basic information

species Vitis vinifera
transcript Vv09s0054g00090.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0054g00090.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT2G44120.1 (Arabidopsis thaliana), 5'ss of exon 3
CAAAAGGAGCTGATTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGGgtatgcacttggactatagttatttccattgatacctttactttcatattaatattctggttctcattcctgttcac-tctggaactttcagtatcaatgc
 | || ||| |||| | ||||||||  ||||||||| |||| || || || |||||||| || |||| |||  | || ||||| |||||||||||||||||||  | |         ||||||   | | ||| |    | |   ||  | |||||| || | |||   ||     | ||  | || |||         
GATAACGAGTTGATCCGATTGAAGCGGGAGGCTAAGTTGAAAGGAGGTTTCTACGTTGACCCTGAGGCTAAGTTGCTCTTTATCATTCGTATCCGTGGgtatgtgccta--------ttatttgtgt-gttacataagttgttgcatatagattctgttttttatttacgtgattgtttgtcatttgcag---------

upper sequence: Vv09s0054g00090.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S28_10V6.2 (Physcomitrella patens), 5'ss of exon 2
CAAAAGGAGCTGATTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGGgtatgcacttggactatagttatttccattgatacctttactttcatattaatattctggttctcattcctgttcactctggaactttcagtatcaatgc
 ||||||| |||||     ||||    ||||| ||||||||||||||||| |||||||| ||||||   || ||| | ||| | ||||| |||||||||||   ||  | |   | |   ||    |  |||| |  |  |      |  |  |          |    || ||        | |    |  | |   
GAAAAGGAACTGATCACTCTGAAAAGGGAGGCCAAGCTGAAGGGTGGATTCTACGTTGAGCCAGAGCCCAAGCTTATGTTTGTCATTCGAATCCGTGGgtaaagacgggcatctttgactttgtattcaatacgtcaatgtgttatgtggtgctgaaagatatttagacgtccatcaaacgtcatcgtctgacgaact

upper sequence: Vv09s0054g00090.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S243_40V6.1 (Physcomitrella patens), 5'ss of exon 2
CAAAAGGAGCTGATTCAATTGAAGCATGAGGCTAAGCTGAAGGGTGGATTTTACGTTGATCCAGAGGTTAAACTTCTATTTATTATTCGTATCCGTGGgtatgcacttggactat-agttatttccattgatacctttactt----tcatattaatattc--tggttct-cattcctgttcactctggaactttcagtatcaatgc--------------
 |||||||  ||||  | ||||||   ||||||||||||||||||||||| || || || ||||||  ||| ||| | ||| | || |||||||||||||| |  || |    |  |  |  ||   |    |  |||| ||    ||    | | |  |  ||||||| ||      |  |   |  |||  |    |  | ||               
GAAAAGGATTTGATCAATTTGAAGAGGGAGGCTAAGCTGAAGGGTGGATTCTATGTCGAGCCAGAGCCTAAGCTTATGTTTGTCATCCGTATCCGTGGgtaggacctcgttaaacgaacttcttttgtgctcaattttaattcgcttccccctgagagccattggttcttcagcgaaatctagcgtaaaacacttctaactagtgttattgttgatccag