Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCCAATCTGGCAGGCCTTCTAGTATGTCTCTTGGTAACACAACAGCATTCCACCATAAACTTTCAAGTAGTGCTCATCGGTTTAATTTGATGGTCCAGgtgaatagcttgtttttgcttacattcgtatcaattgatatcttggatctatttgtctgtgtgcttgcacgtgccagcatttcctttttgttaagcaacc...

Basic information

species Vitis vinifera
transcript Vv09s0018g01920.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0018g01920.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G00570.2 (Glycine max), 5'ss of exon 5
ACGCCAATCTGGCAGGCCTTCTAGTATGTCTCTTGGTAACACAACAGCATTCCACCATAAACTTTCAAGTAGTGCTCATCGGTTTAATTTGATGGTCCAGgtgaatagctt-gtttttgctt-acatt--cgtatca-attgatatcttggatctatttgtctgtgtgcttgcacgtgccagcatttcctttttgttaagcaacc
 |||||  || | |||||||| ||||| ||  || |||| ||||||||||| || ||||||||| |||| ||||| ||||| || |||||||||||||||||||  |  |  || ||  ||| | |||  | | | | | |||  |  || |   | |  |  |  || || || |  |    || |    || |||  |  |  
TCGCCAGACTAGTAGGCCTTCAAGTATATCCATTAGTAATACAACAGCATTTCAACATAAACTTACAAGCAGTGCCCATCGCTTCAATTTGATGGTCCAGgtgagaatttccgtcttgacttgatattggcttgttacactgaagtactgaac--aatgtttggaatggtttca-gaacagagatgttgcattggttgggaca--

upper sequence: Vv09s0018g01920.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G23840.1 (Glycine max), 5'ss of exon 4
ACGCCAATCTGGCAGGCCTTCTAGTATGTCTCTTGGTAACACAACAGCATTCCACCATAAACTTTCAAGTAGTGCTCATCGGTTTAATTTGATGGTCCAGgtgaatagct-tgtttttgctt-acatt--cgtatca-attgatatcttggatctatttgtctgtgtgcttgcacgtgccagcatttcctttttgttaagcaacc
 ||||   || | |||||||| ||||| ||  || |||| ||||||||||| || ||||||||  |||| ||||| ||||| || ||||||||||| |||||||  |  | ||| ||  ||| | |||  | | | | | |||  |  || ||| || | |  |  || || || |  |    || |    ||||||  |  |  
TCGCCGGACTAGTAGGCCTTCAAGTATATCCATTAGTAATACAACAGCATTTCAACATAAACTGACAAGCAGTGCCCATCGCTTCAATTTGATGGTTCAGgtgagaatttctgtcttgacttgatattgacttgtaacactgaagtactg-atcaatgt-ttggaatggtttca-gaacagagatgttgcatttgttgggaca--