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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATTCCCACTCCCAAAGTTATAATAGATCAAGACTCGGATCCAAATGCAACTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataacttttacatttctggatcagatatttttgtttgtctaattttttgcttctgccattttattgactcatacccagaaaaggaaattattggttctgtgagttcctttgtctttggctcagtttgagtacctttatctttctacaataggatttctgatacatcatctagcttttttaaattgcttgcag

Basic information

species Vitis vinifera
transcript Vv09s0018g01780.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0018g01780.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os08g14440.1 (Oryza sativa), 5'ss of exon 3
AATTCCCACTCCCAAAGTTATAATAGATCAAGACTCGGATCCAAATGCAACTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataacttttacatttctggatcagatatttttgtttgtctaattttttgcttctgccattttattgactcatacccagaaaaggaaattattggttctgtgagttcctttgtctttggctcagtttgagtacctttatctttctacaataggatttctgatacatcatctagcttttttaaattgcttgcag
| |||| || || ||||||||||||||||||||||| |||||  |||| || ||||| ||||||||||| ||||| ||  | || |  ||||| || || ||||     | ||| |  |       || ||| |||      || |      |   |||     |   ||   |  | |   ||  |   | || |  ||  ||                                                                                             
AGTTCCTACCCCGAAAGTTATAATAGATCAAGACTCAGATCCGGATGCGACCATTGTAGAGATAACTTTGGGTGACCGTCTCGGTGATCTTCTTGATACCgtatg----catttgcgctggcctcacaaataatttcacaattcaatagcaataaatctaattatcattttcattgtgct--gattatttatttttctgtcgtgaag------------------------------------------------------------------------------------------

upper sequence: Vv09s0018g01780.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G120579_T02 (Zea mays), 5'ss of exon 2
AATTCCCACTCCCAAAGTTATAATAGATCAAGACTCGGATCCAAATGCAACTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataacttttacatttctggatcagatatttttgtttgtctaattttttgcttctgccattttattgactcatacccagaaaaggaaattattggttctgtgagttcctttgtctttggctcagtttgagtacctttatctttctacaataggatttctgatacatcatctagcttttttaaattgcttgcag
| | || |  || |||||||||||||| |||||||| |||||  ||||||| ||||| || ||||| || ||||||||  | || |  || || || || ||||  ||   || ||||         || | |   ||||   |  ||           | |||||| ||  |||  ||   ||  | ||  |||||         |  |||  ||| || | |  |     | ||   | | |   |||   |   |||||  || ||                            
AGTCCCTATCCCGAAAGTTATAATAGACCAAGACTCAGATCCGGATGCAACCATTGTAGAAATAACCTTGGGTGATCGTCTTGGCGATCTCCTTGATACGgtatgtta---ttcacataa-------agttctcactgttgaccagat-----------gacatttttttc-ctcgaac--ggagcatgatcttattaac------atctcccatgtattagacctacaagaaataaaatga-caaactatgcttt-atttcacatgcag---------------------------

upper sequence: Vv09s0018g01780.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G00560.1 (Glycine max), 5'ss of exon 3
AATTCCCACTCCCAAAGTTATAATAGATCAAGACTCGGATCCAAATGCAACTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataacttttacatttctggatcagatatttttgtttgtctaattttttgcttctgccattttattgact--catacccagaaaaggaaattattggttctgtgagttcctttgtctttggctcagtttgagtacctttatctttctacaataggatttctgatacatcatctagcttttttaaattgcttgcag
 ||||| |||||   |||||| || ||||||||||| |||||| |||||||| | || |||||||| |||||||||||| | || || ||||| |||||||||       ||||  || |          ||||||| | |     |||| || ||| |     | ||||   |   |||  ||| |   |||| |  |   |||   || | | | |  |   |                                                                          
CATTCCAACTCCGGTAGTTATTATTGATCAAGACTCTGATCCAGATGCAACTGTGGTCGAGATAACCTTTGGTGATCGCCTTGGGGCTCTTCTTGACACTgtaagccgttttttttatat----------tatttttctctact--atttcttccttgtatatatgtattagttaatataaacaggattcgaaaat-ctaactct---agctacctggattgcag--------------------------------------------------------------------------

upper sequence: Vv09s0018g01780.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G44740.1 (Glycine max), 5'ss of exon 3
AATTCCCACTCCCAAAGTTATAATAGATCAAGACTCGGATCCAAATGCAACTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataacttttacatttctggatcagatat-ttttgtttgtctaattt---tttgcttctgccattttattgactcatacccagaaaaggaaattattggttctgtgagttcctttgtctttggctcagtttgagtacctttatctttctacaataggatttctgatacatcatctagcttttttaaattgcttgcag
 ||||| |||||   ||||||||| ||||||||||| || ||| |||||||| | || |||||||| |||||||||||| | || || ||||| |||||||||         || | |   || || | || | | ||  ||   |||| |        ||     || | | ||  |   |                                                                                                                       
CATTCCAACTCCGGTAGTTATAATTGATCAAGACTCTGACCCAGATGCAACTGTGGTCGAGATAACCTTTGGTGATCGCCTTGGGGCTCTTCTTGACACTgtaagccgttcatttcttccttgtattatatgtatattaattaattaatataaacagaatttcaaaatctgactgtattgcag----------------------------------------------------------------------------------------------------------------------

upper sequence: Vv09s0018g01780.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G23440.1 (Glycine max), 5'ss of exon 3
AATTCCCACTCCCAAAGTTATAATAGATCAAGACTCGGATCCAAATGCAACTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataacttttacatttctggatcagatatttttgtttgtctaat-tttttgcttctgccattttattgactcatacccagaaaaggaaattattggttctgtgagttcctttgtctttggctcagtttgagtacctttatctttctacaataggatttctgatacatcatctagcttttttaaattgcttgcag
 ||||| ||||||  ||||||||| || |||||||| |||||  |||| ||  | |||||||||||||||||||||||  | ||||| ||||| ||||| |||    |   ||    |   |  ||  |||  | |   || ||||||  ||||  || |  | ||| ||  |  | ||     || |   |||| ||||                                                                                                  
CATTCCAACTCCCGTAGTTATAATTGACCAAGACTCTGATCCTGATGCTACCGTGGTGGAGATAACTTTTGGTGATCGGCTTGGAGCACTTCTTGACACAgtaagccattcttcgagtaaatctat--gattgtgtcacttatctaatgcttttcttttttacttttgatatatgcttattgtcaatacagaatttttgggg------------------------------------------------------------------------------------------------

upper sequence: Vv09s0018g01780.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G02580.1 (Glycine max), 5'ss of exon 3
AATTCCCACTCCCAAAGTTATAATAGATCAAGACTCGGATCCAAATGCAACTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataacttttacatttctggatcagatatttttgtttgtctaat-tttttgcttctgccattttattgactcatacccagaaaaggaaattattggttctgtgagttcctttgtctttggctcagtttgagtacctttatctttctacaataggatttctgatacatcatctagcttttttaaattgcttgcag
 ||||| ||||||  ||||||||| || |||||||| |||||  |||| ||  | |||||||||||||||||||||||  | || || ||||| ||||| |||    |   | |   |   |  ||  | |  | |   || ||||||  ||||  || |  | ||| ||  |  |  |      | |   |||| ||||                                                                                                  
CATTCCAACTCCCGTAGTTATAATTGACCAAGACTCTGATCCCGATGCTACCGTGGTGGAGATAACTTTTGGTGATCGGCTTGGGGCACTTCTTGACACAgtaagccattctctgagtaaatctat--gcttgtgtcacttatctaatgcttttcttttttacttttgatatatgctgattgtcgatacagaatttttgggg------------------------------------------------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349823556|gb|FQ414966.1|FQ414966
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|28965852|gb|CB344885.1|CB344885
EST:     CTATTGTGGAGGTAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|32271352|gb|CD720511.1|CD720511
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|110386695|gb|EC951311.1|EC951311
EST:     TATTGTGGAGATAACTTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: TATTGTGGAGATAAC-TTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|111125066|gb|EE253677.1|EE253677
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCACTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|351024111|gb|FQ423534.1|FQ423534
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|351031377|gb|FQ445402.1|FQ445402
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|34542620|gb|CF510852.1|CF510852
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|349823504|gb|FQ414914.1|FQ414914
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|110372559|gb|EC936737.1|EC936737
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|32248427|gb|CD714246.1|CD714246
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|110387079|gb|EC951719.1|EC951719
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|351015119|gb|FQ444408.1|FQ444408
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|351022170|gb|FQ438755.1|FQ438755
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|110390868|gb|EC955807.1|EC955807
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|26262317|gb|CA813380.1|CA813380
EST:     CTATNGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|29784413|gb|CB345109.2|CB345109
EST:     CTATTGTGGAGGTAACTTTTGGTGATCGCTTGGGAGCGCTTCTGGACAAT                         ATGAATGCACTTAAAAATGTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|294965939|gb|GW839278.1|GW839278
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCACTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|32268834|gb|CD717993.1|CD717993
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|110385943|gb|EC950505.1|EC950505
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|110413183|gb|EC978960.1|EC978960
EST:     GAGATAAACTTTTGGTGATCGC-TGGGAAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: GAGAT-AACTTTTGGTGATCGCTTGGG-AGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|29784391|gb|CB345050.2|CB345050
EST:     CTATTGTGGAGGTAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|32269676|gb|CD718835.1|CD718835
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|110372429|gb|EC936593.1|EC936593
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|110383897|gb|EC948302.1|EC948302
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|110687744|gb|EE065504.1|EE065504
EST:     CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
EST: gi|29785638|gb|CB342854.2|CB342854
EST:     CGCTTCTCGACACT                         ATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT
genomic: CGCTTCTCGACACTgtataataac ... ttgcttgcagATGAATGCACTTAAAAATCTAGGGCTGAATGTTGTTAAAGCAAATGTCTTT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATTCCCACTCCCAAAGTTATAATAGATCAAGACTCGGATCCAAATGCAACTATTGTGGAGATAACTTTTGGTGATCGCTTGGGAGCGCTTCTCGACACTgtataataacttttacatttctggatcagatatttttgtttgtctaattttttgcttctgccattttattgactcatacccagaaaaggaaattattggttctgtgagttcctttgtctttggctcagtttgagtacctttatctttctacaataggatttctgatacatcatctagcttttttaaattgcttgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT