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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGCATCTCAACTGATAAAATACTTGATGTGAAAAAGCTGCTAGCTGTCAATGTGGAAACATGTCATCTCACCAACTATTCTTTATCTCATGAGgcaagcttcaaaattttcttcccaaatttgttgaactaaaaacacaattcccctcccaaccacccccccctttttttttttttacatttattattaatttaatcaacaaaattaattttgtgtaatcag

Basic information

species Vitis vinifera
transcript Vv09s0002g07530.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g07530.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G03250.1 (Glycine max), 5'ss of exon 3
GGCATCTCAACTGATAAAATACTTGATGTGAAAAAGCTGCTAGCTGTCAATGTGGAAACATGTCATCTCACCAACTATTCTTTATCTCATGAGgcaagc-----------ttcaa------aattttcttcccaaatttgttgaactaaaaacacaattcccctcccaaccaccccccccttttttttt-ttttacatttattattaatttaatcaacaaaattaattttgtgtaatcag
|| ||||| |||||||| ||||||||||| | ||| ||  | ||||| || ||||| ||||| ||| |||| ||||||||||||||||||||||   ||           |||||      | |||| ||    | | |  | |  | || |   ||||||        | ||||   | | ||| ||| |||| |  |||  |   | |  |   |   |||   | ||        ||
GGTATCTCTACTGATAAGATACTTGATGTAAGAAAACTATTGGCTGTGAAGGTGGAGACATGCCATTTCACAAACTATTCTTTATCTCATGAGgttggcattttttttagttcaattgagtatttttttttttcattattgttagatgaatattaaattccgtatgtgccaacccttgcatctttctttattttcctcttaacacctactatactgattcaat-gttgttcctcctctag

upper sequence: Vv09s0002g07530.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G22850.1 (Glycine max), 5'ss of exon 3
GGCATCTCAACTGATAAAATACTTGATGTGAAAAAGCTGCTAGCTGTCAATGTGGAAACATGTCATCTCACCAACTATTCTTTATCTCATGAGgcaagc----------------ttcaaaattttcttcc-----caaatttgttgaactaaaaacac--aattcccctcccaaccacccccccctttttttttttttacatttattattaatttaatcaa--caaaattaattttgtgtaatcag
|||||||| |||||||| ||||||||||| | ||| ||  | ||||| || ||||| ||||| ||| | || || |||||||||||||||||||   ||                || |  ||||| ||       ||   |||||  | |||  | |    |||||    |   | ||||   | | ||| ||| ||| | | |   ||| | |      |  |||| ||  |  |   | |    
GGCATCTCTACTGATAAGATACTTGATGTAAGAAAACTATTGGCTGTGAAGGTGGAGACATGCCATTTTACAAATTATTCTTTATCTCATGAGgttggcattttttttagtttaattgagtatttttttttttcttcattattgttagattaatgatattttattccgtatctgccaacccttgcatctttctttattttcctcttacatttactatgctgattcaaagttgttcctcctttag---