1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGTTAAGCTTCCTTCATGGGCGATGTTTGAACTTGGGAGGGCTCCTGTCTACTGGAAGACCATGAATGGCCTTCCTCCTAGTTCTgtatgtttgtcttggttgttgattttaggaactcggttgcattttcccttggttttattattccgttaatgatgtgcttgaaaaatttttacag
species | Vitis vinifera |
transcript | Vv09s0002g06980.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGAGGGCTCCTGTCTACTGGAAGACCATGAATGGCCTTCCTCCTAGTTCT GGGGAGAAGTTAAAGCTTTTCTACAATCCAGTAGCTAGCAAACTTGTTCCAEST: gi|26256962|gb|CA808025.1|CA808025
genomic: GGAGGGCTCCTGTCTACTGGAAGACCATGAATGGCCTTCCTCCTAGTTCTgtatgtttgt ... atttttacagGGGGAGAAGTTAAAGCTTTTCTACAATCCAGTAGCTAGCAAACTTGTTCCA
EST: GGAGGGCTCCTGTCTACTGGAAGACCATGAATGGCCTTCCTCCTAGTTCT GGGGAGAAGTTAAAGCTTTTCTACAATCCAGTAGCTAGCAAACTTGTTCCAEST: gi|32249446|gb|CD715265.1|CD715265
genomic: GGAGGGCTCCTGTCTACTGGAAGACCATGAATGGCCTTCCTCCTAGTTCTgtatgtttgt ... atttttacagGGGGAGAAGTTAAAGCTTTTCTACAATCCAGTAGCTAGCAAACTTGTTCCA
EST: GGAGGGCTCCTGTCTACTGGAAGACCATGAATGGCCTTCCTCCTAGTTCT GGGGAGAAGTTAAAGCTTTTCTACAATCCAGTAGCTAGCAAACTTGTTCCAEST: gi|32249285|gb|CD715104.1|CD715104
genomic: GGAGGGCTCCTGTCTACTGGAAGACCATGAATGGCCTTCCTCCTAGTTCTgtatgtttgt ... atttttacagGGGGAGAAGTTAAAGCTTTTCTACAATCCAGTAGCTAGCAAACTTGTTCCA
EST: GGAGGGCTCCTGTCTACTGGAAGACCATGAATGGCCTTCCTCCTAGTTCT GGGGAGAAGTTAAAGCTTTTCTACAATCCAGTAGCTAGCAAACTTGTTCCAEST: gi|110363813|gb|EC927432.1|EC927432
genomic: GGAGGGCTCCTGTCTACTGGAAGACCATGAATGGCCTTCCTCCTAGTTCTgtatgtttgt ... atttttacagGGGGAGAAGTTAAAGCTTTTCTACAATCCAGTAGCTAGCAAACTTGTTCCA
EST: GGAGGGCTCCTGTTTACTGGAAGACCATGAATGGCCTTCCTCCTAGTTCT GGGGAGAAGTTAAAGCTTTTTCTACAATCCAGTAGCTAGCAAACTTGTTCCEST: gi|28961921|gb|CB340979.1|CB340979
genomic: GGAGGGCTCCTGTCTACTGGAAGACCATGAATGGCCTTCCTCCTAGTTCTgtatgtttgt ... atttttacagGGGGAGAAGTTAAAGC-TTTTCTACAATCCAGTAGCTAGCAAACTTGTTCC
EST: GGAGGGCTCCTGTCTACTGGAAGACCATGAATGGCCTTCCTCCTAGTTCT GGGGAGAAGTTAAAGCTTTTCTACAATCCAGTAGCTAGCAAA--TGTTCCAEST: gi|110385730|gb|EC950281.1|EC950281
genomic: GGAGGGCTCCTGTCTACTGGAAGACCATGAATGGCCTTCCTCCTAGTTCTgtatgtttgt ... atttttacagGGGGAGAAGTTAAAGCTTTTCTACAATCCAGTAGCTAGCAAACTTGTTCCA
EST: GGAGGGCTCCTGTCTACTGGAAGACCATGAATGGCCTTCCTCCTAGTTCT GGGGAGAAGTTAAAGCTTTTCTACAATCCAGTAGCTAGCAAACTTGTTCCAEST: gi|32269789|gb|CD718948.1|CD718948
genomic: GGAGGGCTCCTGTCTACTGGAAGACCATGAATGGCCTTCCTCCTAGTTCTgtatgtttgt ... atttttacagGGGGAGAAGTTAAAGCTTTTCTACAATCCAGTAGCTAGCAAACTTGTTCCA
EST: GGAGGGCTCCTGTCTACTGGAAGACCATGAATGGCCTTCCTCCTAGTTCT GGGGAGAAGTTAAAGCTTTTCTACAATCCAGTAGCTAGCAAACTTGTTCCA
genomic: GGAGGGCTCCTGTCTACTGGAAGACCATGAATGGCCTTCCTCCTAGTTCTgtatgtttgt ... atttttacagGGGGAGAAGTTAAAGCTTTTCTACAATCCAGTAGCTAGCAAACTTGTTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGTTAAGCTTCCTTCATGGGCGATGTTTGAACTTGGGAGGGCTCCTGTCTACTGGAAGACCATGAATGGCCTTCCTCCTAGTTCTgtatgtttgtcttggttgttgattttaggaactcggttgcattttcccttggttttattattccgttaatgatgtgcttgaaaaatttttacag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA