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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGAgtgagttcttggcttttcactttcttttcccagaagtcctagaaaatattgcagtgttgtttcttctacttcttttcccctccttggtttcaattttgaattagatttttctggaattaccttatgcag

Basic information

species Vitis vinifera
transcript Vv09s0002g06460.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110375149|gb|EC940110.1|EC940110
EST:     AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGA                         AAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
genomic: AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGAgtgagttctt ... ccttatgcagAAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
EST: gi|110380681|gb|EC945965.1|EC945965
EST:     AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGA                         AAATCACAACCTCTACGGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
genomic: AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGAgtgagttctt ... ccttatgcagAAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
EST: gi|349823577|gb|FQ414987.1|FQ414987
EST:     AGTTACCATTGCAGAAATTCTGAAAAACAATGAACTGGCTGTTGAAAAGA                         AAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
genomic: AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGAgtgagttctt ... ccttatgcagAAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
EST: gi|110378701|gb|EC943845.1|EC943845
EST:     AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGA                         AAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
genomic: AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGAgtgagttctt ... ccttatgcagAAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
EST: gi|30132619|gb|CB917958.1|CB917958
EST:     AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGA                         AAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
genomic: AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGAgtgagttctt ... ccttatgcagAAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
EST: gi|110418470|gb|EC984627.1|EC984627
EST:     AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGA                         AAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
genomic: AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGAgtgagttctt ... ccttatgcagAAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
EST: gi|110378310|gb|EC943434.1|EC943434
EST:     AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGA                         AAATCACAACCTCTACGGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
genomic: AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGAgtgagttctt ... ccttatgcagAAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
EST: gi|32267782|gb|CD716941.1|CD716941
EST:     AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGA                         AAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
genomic: AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGAgtgagttctt ... ccttatgcagAAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
EST: gi|110382504|gb|EC946801.1|EC946801
EST:     AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGA                         AAATCACAACCTCTACGGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
genomic: AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGAgtgagttctt ... ccttatgcagAAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
EST: gi|26266752|gb|CA817815.1|CA817815
EST:     AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGA                         AAATCT-AACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
genomic: AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGAgtgagttctt ... ccttatgcagAAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
EST: gi|27586722|gb|CB009417.1|CB009417
EST:     AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGA                         AAATCACAACCTCTACGGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
genomic: AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGAgtgagttctt ... ccttatgcagAAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
EST: gi|32271236|gb|CD720395.1|CD720395
EST:     AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGA                         AAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
genomic: AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGAgtgagttctt ... ccttatgcagAAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
EST: gi|110695756|gb|EE074133.1|EE074133
EST:     AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGA                         AAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
genomic: AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGAgtgagttctt ... ccttatgcagAAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
EST: gi|110392645|gb|EC958212.1|EC958212
EST:     AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGA                         AAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
genomic: AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGAgtgagttctt ... ccttatgcagAAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
EST: gi|71877464|gb|DT026519.1|DT026519
EST:     AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGA                         AAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG
genomic: AGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGAgtgagttctt ... ccttatgcagAAATCACAACCTCTACAGTCGATATGAAAGATGAATCTAGGGGAAGACCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTATTGCCACAGTAGTTACCATTGCAGAAATTCTGAAAAACAATGGACTGGCTGTTGAAAAGAgtgagttcttggcttttcactttcttttcccagaagtcctagaaaatattgcagtgttgtttcttctacttcttttcccctccttggtttcaattttgaattagatttttctggaattaccttatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT