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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACAgtaagtttcggtgacagtttttggggattcttgttgttggatgaggcatagtctaaatcttttgcaaatttgttttgatattctattttag

Basic information

species Vitis vinifera
transcript Vv09s0002g04680.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g04680.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G79920.2 (Arabidopsis thaliana), 5'ss of exon 4
ATTGGTCCATTTCAATCTACAAAAGTTGAGCGAGCTAAATTGAAGGTGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACAgtaagtttc-----ggtgacagtttttggg--gattcttgttgttggatgaggcatagtctaaatcttttgcaaatttgttttgatattctattttag------------------------------------------------
|||||||| || || ||  ||||||  ||| | || ||  |||| ||||| ||| |  |||| |||||||| ||||| || |||||||||||||| |||||||||     |   ||  |||   ||  ||||||   | ||   |||     |||    ||| |    ||   ||  ||    |   |  ||||                                                
ATTGGTCCCTTCCAGTCATCAAAAGGCGAGAGGGCAAAGCTGAAAGTGAAAGTTAGATTGAACCTGCATGGAATTGTCTCTGTTGAATCAGCAACTgtaagtttctttacgtgaactatttaaaggccgattctctctattaactgattacaagtt--gatcatgcagaaccgtggcttaccttatgaacttagccacttatggttcgttaatttatccacttttatctctcctaaatgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351035450|gb|FQ463295.1|FQ463295
EST:     TGAAGGTTCGGCTGAATCTGCATGGTATTGTGTCAGTTGAATCAGCAACA                         CTCTTGGAAGAAGGAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGACAAAG
genomic: TGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACAgtaagtttcg ... tctattttagCTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGGCAAAG
EST: gi|351033537|gb|FQ447696.1|FQ447696
EST:     TGAAGGTTCGGCTGAATCTGCATGGTATTGTGTCAGTTGAATCAGCAACA                         CTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGACAAAG
genomic: TGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACAgtaagtttcg ... tctattttagCTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGGCAAAG
EST: gi|349825219|gb|FQ417940.1|FQ417940
EST:     TGAAGGTTCGGCTGAATCTGCATGGTATTGTGTCAGTTGAATCAGCAACA                         CTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGACAAAG
genomic: TGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACAgtaagtttcg ... tctattttagCTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGGCAAAG
EST: gi|351026704|gb|FQ436357.1|FQ436357
EST:     TGAAGGTTCGGCTGAATCTGCATGGTATTGTGTCAGTTGAATCAGCAACA                         CTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGACAAAG
genomic: TGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACAgtaagtttcg ... tctattttagCTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGGCAAAG
EST: gi|71856570|gb|DT005625.1|DT005625
EST:     ATTGTGTCAGTTGAATCAGCAACA                         CTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGACAAAG
genomic: ATTGTGTCAGTTGAATCAGCAACAgtaagtttcg ... tctattttagCTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGGCAAAG
EST: gi|351056576|gb|FQ442404.1|FQ442404
EST:     TGAAGGTTCGGCTGAATCTGCATGGTATTGTGTCAGTTGAATCAGCAACA                         CTCTTGGAAGAAGGAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGACAAAG
genomic: TGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACAgtaagtttcg ... tctattttagCTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGGCAAAG
EST: gi|71857129|gb|DT006184.1|DT006184
EST:     ATTGTGTCAGTTGAATCAGCAACA                         CTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGACAAAG
genomic: ATTGTGTCAGTTGAATCAGCAACAgtaagtttcg ... tctattttagCTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGGCAAAG
EST: gi|351021829|gb|FQ437214.1|FQ437214
EST:     TGAAGGTTCGGCTGAATCTGCATGGTATTGTGTCAGTTGAATCAGCAACA                         CTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGACAAAG
genomic: TGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACAgtaagtttcg ... tctattttagCTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGGCAAAG
EST: gi|351015172|gb|FQ445456.1|FQ445456
EST:     TGAAGGTTCGGCTGAATCTGCATGGTATTGTGTCAGTTGAATCAGCAACA                         CTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGACAAAG
genomic: TGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACAgtaagtttcg ... tctattttagCTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGGCAAAG
EST: gi|351016149|gb|FQ435469.1|FQ435469
EST:     TGAAGGTTCGGCTGAATCTGCATGGTATTGTGTCAGTTGAATCAGCAACA                         CTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGACAAAG
genomic: TGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACAgtaagtttcg ... tctattttagCTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGGCAAAG
EST: gi|351014027|gb|FQ434179.1|FQ434179
EST:     TGAAGGTTCGGCTGAATCTGCATGGTATTGCGTCAGTTGAATCAGCAACA                         CTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGACAAAG
genomic: TGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACAgtaagtttcg ... tctattttagCTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGGCAAAG
EST: gi|349830554|gb|FQ416852.1|FQ416852
EST:     TGAAGGTTCGGCTGAATCTGCATGGTATTGTGTCAGTTGAATCAGCAACA                         CTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGACAAAG
genomic: TGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACAgtaagtttcg ... tctattttagCTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGGCAAAG
EST: gi|351022620|gb|FQ447142.1|FQ447142
EST:     TGAAGGTTCGGCTGAATCTGCATGGTATTGTGTCAGTTGAATCAGCAACA                         CTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGACAAAG
genomic: TGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACAgtaagtttcg ... tctattttagCTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGGCAAAG
EST: gi|351045993|gb|FQ441376.1|FQ441376
EST:     TGAAGGTTCGGCTGAATCTGCATGGTATTGTGTCAGTTGAATCAGCAACA                         CTCTTGGAAGAAGGAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGACAAAG
genomic: TGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACAgtaagtttcg ... tctattttagCTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGGCAAAG
EST: gi|30295860|gb|CB972654.1|CB972654
EST:     TGAAGGTTCGGCTGAATCTGCATGGTATTGTGTCAGTTGAATCAGCAACA                         CTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAGAAGAGCCGACAAAG
genomic: TGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACAgtaagtttcg ... tctattttagCTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGGCAAAG
EST: gi|351031000|gb|FQ439036.1|FQ439036
EST:     TGAAGGTTCGGCTGAATCTGCATGGTATTGTGTCAGTTGAATCAGCAACA                         CTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGACAAAG
genomic: TGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACAgtaagtttcg ... tctattttagCTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGGCAAAG
EST: gi|351026139|gb|FQ428151.1|FQ428151
EST:     TGAAGGTTCGGCTGAATCTGCATGGTATTGTGTCAGTTGGATCAGCAACA                         CTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGACAAAG
genomic: TGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACAgtaagtttcg ... tctattttagCTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGGCAAAG
EST: gi|27579965|gb|CB002660.1|CB002660
EST:     TGAAGGTTCGGCTGAATCTGCATGGTATTGTGTCAGTTGAATCAGCAACA                         CTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGACAAAG
genomic: TGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACAgtaagtttcg ... tctattttagCTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGGCAAAG
EST: gi|351026310|gb|FQ428322.1|FQ428322
EST:     TGAAGGTTCGGCTGAATCTGCATGGTATTGTGTCAGTTGAATCAGCAACA                         CTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGACAAAG
genomic: TGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACAgtaagtttcg ... tctattttagCTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGGCAAAG
EST: gi|349832595|gb|FQ421953.1|FQ421953
EST:     TGAAGGTTCGGCTGAATCTGCATGGTATTGTGTCAGTTGAATCAGCAACA                         CTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGACAAAG
genomic: TGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACAgtaagtttcg ... tctattttagCTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGGCAAAG
EST: gi|351044463|gb|FQ442994.1|FQ442994
EST:     TGAAGGTTCGGCTGAATCTGCATGGTATTGTGTCAGTTGAATCAGCAACA                         CTCTTGGAAGAAGGAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGACAAAG
genomic: TGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACAgtaagtttcg ... tctattttagCTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGGCAAAG
EST: gi|351016635|gb|FQ424062.1|FQ424062
EST:     TGAAGGTTCGGCTGAATCTGCATGGTATTGTGTCAGTTGAATCAGCAACA                         CTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGACAAAG
genomic: TGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACAgtaagtttcg ... tctattttagCTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGGCAAAG
EST: gi|71856214|gb|DT005269.1|DT005269
EST:     TGAAGGTTCGGCTGAATCTGCATGGTATTGTGTCAGTTGAATCAGCAACA                         CTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGACAAAG
genomic: TGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACAgtaagtttcg ... tctattttagCTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGGCAAAG
EST: gi|351027160|gb|FQ440024.1|FQ440024
EST:     TGAAGGTTCGGCTGAATCTGCATGGTATTGTGTCAGTTGAATCAGCAACA                         CTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGACAAAG
genomic: TGAAGGTTCGGCTGAATCTGCATGGGATTGTGTCAGTTGAATCAGCAACAgtaagtttcg ... tctattttagCTCTTGGAAGAAGAAGAGGTCGAAATTCCTGTTGTAAAAGAGCCGGCAAAG