1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CACTTTTGATGCTCTAAAGACTTATGTCCCTGAAATGGTCGAATTGCTTGTTGACTGTGTGAGGAACCCTGTGTTCTTGGATTGGGAAGTCAATGAACAGgtaaatctcttgaattctcaaatttaccatctttacattaaagtaaaagatgtacttttatccttttataaggaacctgatggttattttttcttgattt...
species | Vitis vinifera |
transcript | Vv09s0002g03200.t01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGACTGTGTGAGGAACCCTGTGTTCTTGGATTGGGAAGTCAATGAACAG CTTCAAAAGGTGAAAGCAGEST: gi|110729327|gb|EE105483.1|EE105483
genomic: TTGACTGTGTGAGGAACCCTGTGTTCTTGGATTGGGAAGTCAATGAACAGgtaaatctct ... gtttgtacagCTTCAAAAGGTGAAAGCAG
EST: TTGACTGTGTGAGGAACCCTGTGTTCTTGGATTGGGAAGTCAATGAACAG CTTCAAAAGGTGAAAGCAGAGCTTGGAGAACTTTCCCAACA-TCCTCAAGGEST: gi|27580925|gb|CB003620.1|CB003620
genomic: TTGACTGTGTGAGGAACCCTGTGTTCTTGGATTGGGAAGTCAATGAACAGgtaaatctct ... gtttgtacagCTTCAAAAGGTGAAAGCAGAGCTTGGAGAACTTTCC-AACAATCCTCAAGG
EST: TTGACTGTGTGAGGAACCCTGTGTTCTTGGATTGGGAAGTCAATGAACAG CTTCAAAAGGTGAAAGCAGAGCTTGGAGAACTTTCCAACAATCCTCA
genomic: TTGACTGTGTGAGGAACCCTGTGTTCTTGGATTGGGAAGTCAATGAACAGgtaaatctct ... gtttgtacagCTTCAAAAGGTGAAAGCAGAGCTTGGAGAACTTTCCAACAATCCTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACTTTTGATGCTCTAAAGACTTATGTCCCTGAAATGGTCGAATTGCTTGTTGACTGTGTGAGGAACCCTGTGTTCTTGGATTGGGAAGTCAATGAACAGgtaaatctcttgaattctcaaatttaccatctttacattaaagtaaaagatgtacttttatccttttataaggaacctgatggttattttttcttgattt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agtaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaggaac