Skip to another splice site:
1  
 5'  3'   
2  
 5'  3'   
3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAACAAAGACCAAGAAACAGAACAAGCCTGGTAGTTTGCTTCACAAGTCTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaagatattaagattttatcatccttgtttgatttcatatgattcagctgtttattaatgagttgttaaattgtaaaagaattttttgtagtctg...

Basic information

species Vitis vinifera
transcript Vv09s0002g02560.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71877453|gb|DT026508.1|DT026508
EST:     CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAG                         GTGGGAGATAACTACTACAGACCAGATCTTAAGAAAGCAGCTCTTGCAAGG
genomic: CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaaga ... gttcttgtagGTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
EST: gi|37188885|gb|CF608234.1|CF608234
EST:     CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAG                         GTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
genomic: CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaaga ... gttcttgtagGTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
EST: gi|30126857|gb|CB912196.1|CB912196
EST:     CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAG                         GTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
genomic: CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaaga ... gttcttgtagGTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
EST: gi|37187461|gb|CF606814.1|CF606814
EST:     CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAG                         GTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
genomic: CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaaga ... gttcttgtagGTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
EST: gi|30137111|gb|CB922449.1|CB922449
EST:     CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAG                         GTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
genomic: CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaaga ... gttcttgtagGTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
EST: gi|71866381|gb|DT015436.1|DT015436
EST:     CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAG                         GTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
genomic: CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaaga ... gttcttgtagGTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
EST: gi|30127339|gb|CB912678.1|CB912678
EST:     CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAG                         GTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
genomic: CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaaga ... gttcttgtagGTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
EST: gi|77581630|gb|DV219763.1|DV219763
EST:     CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAG                         GTGGGAGATAACTACTACAGACCAGATCTTAAGAAAGCAGCTCTTGCAAGG
genomic: CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaaga ... gttcttgtagGTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
EST: gi|110365315|gb|EC928109.1|EC928109
EST:     CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAG                         GTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
genomic: CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaaga ... gttcttgtagGTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
EST: gi|30136063|gb|CB921401.1|CB921401
EST:     CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAG                         GTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
genomic: CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaaga ... gttcttgtagGTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
EST: gi|71869153|gb|DT018208.1|DT018208
EST:     CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAG                         GTGGGAGATAACTACTACAGACCAGATCTTAAGAAAGCAGCTCTTGCAAGG
genomic: CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaaga ... gttcttgtagGTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
EST: gi|37187417|gb|CF606770.1|CF606770
EST:     CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAG                         GTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
genomic: CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaaga ... gttcttgtagGTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
EST: gi|37187689|gb|CF607042.1|CF607042
EST:     CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAG                         GTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
genomic: CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaaga ... gttcttgtagGTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
EST: gi|71855040|gb|DT004095.1|DT004095
EST:     CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAG                         GTGGGAGATAACTACTACAGACCAGATCTTAAGAAAGCAGCTCTTGCAAGG
genomic: CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaaga ... gttcttgtagGTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
EST: gi|71871612|gb|DT020667.1|DT020667
EST:     CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAG                         GTGGGAGATAACTACTACAGACCAGATCTTAAGAAAGCAGCTCTTGNCA-G
genomic: CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaaga ... gttcttgtagGTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTG-CAAG
EST: gi|71860821|gb|DT009876.1|DT009876
EST:     CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAG                         GTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
genomic: CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaaga ... gttcttgtagGTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
EST: gi|71868068|gb|DT017123.1|DT017123
EST:     CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAG                         GTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
genomic: CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaaga ... gttcttgtagGTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
EST: gi|110393499|gb|EC958782.1|EC958782
EST:     CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAG                         GTGGGAGATAACTACTACAGACCAGATCTTAAGAAAGCAGCTCTTGCAAGG
genomic: CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaaga ... gttcttgtagGTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
EST: gi|110707611|gb|EE084204.1|EE084204
EST:     CTGCCATGAAGAAAGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAG                         GTGGGAGATAACTACTACAGACCAGATCTTAAGAAAGCAGCTCTTGCAAGG
genomic: CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaaga ... gttcttgtagGTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
EST: gi|71866729|gb|DT015784.1|DT015784
EST:     CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAG                         GTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
genomic: CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaaga ... gttcttgtagGTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
EST: gi|30133884|gb|CB919223.1|CB919223
EST:     CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAG                         GTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
genomic: CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaaga ... gttcttgtagGTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
EST: gi|37188785|gb|CF608134.1|CF608134
EST:     CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAG                         GTGGGAGATAACTACTACATACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
genomic: CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaaga ... gttcttgtagGTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
EST: gi|29782791|gb|CB348407.2|CB348407
EST:     CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAG                         GTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG
genomic: CTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaaga ... gttcttgtagGTGGGAGATAACTACTACAGACCAGATCTAAAGAAAGCAGCTCTTGCAAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AACAACAAAGACCAAGAAACAGAACAAGCCTGGTAGTTTGCTTCACAAGTCTGCCATGAAGAAGGAGTTTCGTCGGATGGCAAAGGCAGTTTCAAATCAGgtactaaagatattaagattttatcatccttgtttgatttcatatgattcagctgtttattaatgagttgttaaattgtaaaagaattttttgtagtctg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaagaa