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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGGCCGTGATGTCATTGGTATTGCTGAAACAGGATCAGGAAAGACACTTGCATATCTATTGCCTGCAATCATCCATGTAAATGCTCAGCCAATTTTAGgtataagtgtctttctaattcgttgatgtcgctaatttctgatttctatctatctatctatctatctatatatatatatatatgcacacacatttttttctagttacaagttttggtctttctctgtattttctcag

Basic information

species Vitis vinifera
transcript Vv09s0002g02100.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g02100.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g10050.1 (Oryza sativa), 5'ss of exon 3
AAGGGCCGTGATGTCATTGGTATTGCTGAAACAGGATCAGGAAAGACACTTGCATATCTATTGCCTGCAATCATCCATGTAAATGCTCAGCCAATTTTAGgtat-aagtgtctttctaattcgttgatgtcgctaatttctgatttctatctatctatctatctatctatatatatatatatatgcacacacatttttttctagttacaagttttggtctttctctgtattttctcag
| ||| |||||| | ||||| |||||||||||||||||||| || |||||||| || || || ||||| ||  | ||||| ||||||||||| ||| |||||   || |||   |    ||  || |   || |  | |  |||   |      ||   | | |    || ||   | || | | |         || ||  ||                                  
AGGGGACGTGATCTTATTGGCATTGCTGAAACAGGATCAGGGAAAACACTTGCTTACCTTTTACCTGCCATTGTTCATGTTAATGCTCAGCCGATTCTAGgtgcgaaatgttgcttatgtttcttaac--cgattttcttggatacattctggacttcttttgtggtaatctactaacatttttccgtgtg----ttattaaag----------------------------------

upper sequence: Vv09s0002g02100.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA08G20670.1 (Glycine max), 5'ss of exon 3
AAGGGCCGTGATGTCATTGGTATTGCTGAAACAGGATCAGGAAAGACACTTGCATATCTATTGCCTGCAATCATCCATGTAAATGCTCAGCCAATTTTAGgtataagtgtctttctaattcgttgatgtcgctaatttctgatttctatctatctatctatctatctatatatatatatatatgcacacacatttttttctagttacaagttttggtctttctctgtattttctcag
||||| |||||| | || || ||||| |||||||||||||| ||||||||||| ||  | |||||||| ||  | ||||| ||||||||||||||  || ||   ||| | |    ||     |||  |   ||  ||     ||  || ||    |   | | |||   |||   ||  | ||      | |   ||  |  | |  | |||  |                     
AAGGGGCGTGATCTGATAGGAATTGCAGAAACAGGATCAGGGAAGACACTTGCTTACTTGTTGCCTGCCATTGTGCATGTTAATGCTCAGCCAATACTAAgtg--agtatataaggaaacaactgagatgattagatttcacattgcatgtaagggtgccttt-tctgactatgc-tacctttgttttgccgtccattcgttttcaatattttcag---------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161712403|gb|FC061708.1|FC061708
EST:     TGCATATCTATTGCCTGCAATCATCCATGTAAATGCTCAGCCAATTTTAG                         CTCCAGGAGATGGCCCAATT
genomic: TGCATATCTATTGCCTGCAATCATCCATGTAAATGCTCAGCCAATTTTAGgtataagtgt ... attttctcagCTCCAGGAGATGGCCCAATT