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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCAAAAATAGAGAAACCACGCTTGTTGATCCTTGGAGGAGCTCTTGAGTACCAGCGGGTTTCCAACCTCTTGTCAAGTTTTGATACTTTGTTGCAACAGgttgtgatcatttgcctttctatctgttcagcttgctatctatacttgggaatgtaaagaaaagggatataaattctgtgacctggaatactttattattctagttactggttgttagtgcatgagcaaagaaatatgtttatttactggatttttactttaatggggtttacatactttatag

Basic information

species Vitis vinifera
transcript Vv09s0002g00380.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g00380.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G05100.1 (Glycine max), 5'ss of exon 3
ATCAAAAATAGAGAAACCACGCTTGTTGATCCTTGGAGGAGCTCTTGAGTACCAGCGGGTTTCCAACCTCTTGTCAAGTTTTGATACTTTGTTGCAACAGgttgtgatcatttgcctttctatct--gttcagcttgctatctatacttgggaatgtaaagaaaagggatataaattctgtgacctggaatactttattattctagttactggttgttagtgcatgagcaaagaaatatgtttatttactggatttttactttaatggggtttacatactttatag
 |||||| | || ||||| |||||||||||||||||||| ||||| ||||| || || ||| |||||||||| || ||| | |||||  | ||||| ||||||||     |   || || | |    | | |  |   | | ||  ||    ||| |  |    |  | |  |  | |    ||||   |  | ||   |                                                                                      
GTCAAAAGTGGATAAACCTCGCTTGTTGATCCTTGGAGGGGCTCTAGAGTATCAACGTGTTACCAACCTCTTATCTAGTGTAGATACCCTATTGCAGCAGgttgtacatgtgcaccatttttttataggttacttaagtttttagtctctaaaattttcaattgattggtcaaggtccctaaaccttttagtccttgaaa--------------------------------------------------------------------------------------

upper sequence: Vv09s0002g00380.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G01590.1 (Glycine max), 5'ss of exon 5
ATCAAAAATAGAGAAACCACGCTTGTTGATCCTTGGAGGAGCTCTTGAGTACCAGCGGGTTTCCAACCTCTTGTCAAGTTTTGATACTTTGTTGCAACAGgttgtgatcatttgcctttctatct--gttcagcttgctatctatacttgggaatgtaaagaaaagggatataaattctgtgacctggaatactttattattctagttactggttgttagtgcatgagcaaagaaatatgtttatttactggatttttactttaatggggtttacatactttatag
 |||||| | || ||||| |||||||||||||||||||| ||||| ||||| || || ||| |||||||||| || ||| | |||||  | ||||| ||||||||     | | || || | |    | | |  |   | | ||  ||    | | |    |||||    |   ||   |    ||  | |  |||  | |                                                                                     
GTCAAAAGTGGATAAACCTCGCTTGTTGATCCTTGGAGGGGCTCTAGAGTATCAACGTGTTACCAACCTCTTATCTAGTGTAGATACCCTATTGCAGCAGgttgtacatgtgtaccatttttttatgggttaattaagtttttagtctcttaactttttcaaaaagttg-actgatcaagctgtctcaactttttt-ctgtc------------------------------------------------------------------------------------

upper sequence: Vv09s0002g00380.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G14270.1 (Arabidopsis thaliana), 5'ss of exon 4
ATCAAAAATAGAGAAACCACGCTTGTTGATCCTTGGAGGAGCTCTTGAGTACCAGCGGGTTTCCAACCTCTTGTCAAGTTTTGATACTTTGTTGCAACAGgttgtgatcatttgcctttctatctgttcagcttgctatctatacttgggaatgtaaagaaaagggatataaattctgtgacctggaatactttattattctagt---tactggttgttagtgcatgagcaaagaaatatgtttatttactggatttttactttaatggggtttacatactttatag
  | || || |||||| | ||  | ||||| || || || |  |||||||| ||  |||| || ||||  || |||||||||||||||||||||||||||||     |    ||||  |       | ||  || || | | | | ||    ||   ||||| ||  | |    ||| ||  ||  |    | ||    |  |     |  ||||| | ||                                                                  
TACGAAGATTGAGAAAGCTCGACTATTGATTCTAGGCGGTGGACTTGAGTATCAAAGGGTCTCAAACCAGTTATCAAGTTTTGATACTTTGTTGCAACAGgtgaaatttgcctgccgct-------tacatatttctttttcttcctgttggtggttagaaatggattttgttatctatg-tctaaacccttctacctcttaaacatgttttggttttcag------------------------------------------------------------------