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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttcttgattttgttgaacaacatttactgtcttaatataatgtatatctgaagagtggctggttttggaaactag

Basic information

species Vitis vinifera
transcript Vv09s0002g00170.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os06g09290.2 (Oryza sativa), 5'ss of exon 3
GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttcttgattttgttgaacaacatttactgtcttaatat-----aatgtata-tctgaagagtggctggttttggaaactag---------------------------
| || || || ||||| ||||| || ||| |||| || |||||||| ||||| || |||||||| ||||||||||||||||| || || |||||  |  ||   |  ||     |||    |||   || ||| |       |||| ||| | | || | |  |||   ||    |                               
GAATTAAAGAGTCTGACACTGGATTGGCTCCACCTAGCCAGTGGGACCTTGTATCCGATAAGCAGATGATGCAGGAGGAGCAACCCCTGCAGgtaatgcttgacg--ttcacctaactgactttttggttttattgcattcaaatgcatactgtcaatattccctgtgcttcctcatgccttctactaataagcgtccttctgcaag

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G05220.2 (Glycine max), 5'ss of exon 3
GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggt--ttttcttgattttgttgaaca-acatttactgtcttaatat--aatgtatatctgaagagtggctggttttggaaactag
|||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |||  || |||| || |||       | | ||| |||||||     | || |   ||   ||| |  || | |||   ||
GTATAAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtgattatttgttttatttagtggaatttgttctaagtgttttaatatttgcaggatttgctaactatggttatttattgaa--cag

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G45140.1 (Glycine max), 5'ss of exon 3
GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttcttgattttgttgaacaacatttactgtcttaatataatgtatatc-tgaagagtggctg-gttttggaaactag
|||||||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||  | ||| |  |  || |||  | |  |      | ||||||| |||  | |    ||   || ||| || ||  | |    
GTATCAAGGAGTCTGATACTGGTTTAGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGgtcatatttttgtagatt-ttggtcgaagtgc----ttttaatattatgggtgttgctaatgatgactgtgtatttaacag---

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G01810.1 (Glycine max), 5'ss of exon 3
GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttcttgattttgttgaacaacatttactgtcttaatataatgtatatctgaagagtggctggttttggaaactag--------
|||||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||  || || ||  ||||  |    |  ||||  |  |  | | |  |||||||||| ||      |   | |||  | |          
GTATCAAGGAGTCTGATACTGGATTAGCAGCACCAAGCCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAAGAGCAGCCTCTTCAGgtaattattttttgttttacttggtagaatttgtt--ccaagtgttctgtatatctgcagga--attaactatggctatttattgaacag

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G42370.2 (Glycine max), 5'ss of exon 3
GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtgg--tttttcttgattttgtt-gaacaacatttactgtcttaatataatgtatatctgaagagtggctggttttggaaactag
|||||||||| ||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    ||||| | ||||||||| |||   | |||| | | |    ||  ||   ||    |   |  | |              
GTATCAAGGAGTCTGATACTGGTTTGGCTGCACCAAGCCAGTGGGATCTTGTTTCTGATAAACAAATGATGCAGGAGGAGCAGCCTCTTCAGgtcatatttttgtagattttgtttgaattgcttttaatatttatggatgttgctaatgatgattttaacag--------------

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ13722 (Selaginella moellendorffii), 5'ss of exon 3
GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttcttgattttgttgaacaacatttactgtcttaatataatgtatatctgaagagtggctggttttggaaactag
| |||||||| || || |||||  |||| || || || ||||||||||| || |||||||||||||||||||| || |||||||| || || ||   |    ||  |||  | ||      | |  ||  ||  |    | | | ||| |    ||  ||||||||| |     
GGATCAAGGAGTCCGACACTGGTCTAGCAGCTCCTAGCCAGTGGGATCTGGTGTCTGATAAGCAAATGATGCAAGAAGAGCAGCCACTGCAAgtaagtgagatttttttcttcga------tctcttgcttttct----tttttctctca----tgtttggttttggtag----

upper sequence: Vv09s0002g00170.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ29161 (Selaginella moellendorffii), 5'ss of exon 3
GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttcttgattttgttgaacaacatttactgtcttaatataatgtatatctgaagagtggctggttttggaaactag
| |||||||| || || |||||  |||| || || || ||||||||||| || |||||||||||||||||||| || |||||||| || || ||        ||  |||  | || | |   || || |  | || |  ||  | |  | ||                      
GGATCAAGGAGTCCGACACTGGTCTAGCAGCTCCTAGCCAGTGGGATCTGGTGTCTGATAAGCAAATGATGCAAGAAGAGCAGCCACTGCAAgtaagggagatttttttcttcgatcta---ttgcttttctcatgttttg-gttttggtag----------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351055270|gb|FQ441868.1|FQ441868
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGATCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|110381635|gb|EC934981.1|EC934981
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|46917525|gb|CN546854.1|CN546854
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG                         GTGGCCAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|351037539|gb|FQ462522.1|FQ462522
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAAGAGGATCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|71858037|gb|DT007092.1|DT007092
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|71863099|gb|DT012154.1|DT012154
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|352798958|gb|FQ480807.1|FQ480807
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGATCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|110700764|gb|EE077702.1|EE077702
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|71860941|gb|DT009996.1|DT009996
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|294966728|gb|GW837747.1|GW837747
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|352786546|gb|FQ479753.1|FQ479753
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGATCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|110710904|gb|EE087489.1|EE087489
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|351038545|gb|FQ464411.1|FQ464411
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGATCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|110424138|gb|EC990494.1|EC990494
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|110718922|gb|EE096307.1|EE096307
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|37183695|gb|CF603049.1|CF603049
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG                         GTGGCAAGATGCACAA
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAA
EST: gi|71858529|gb|DT007584.1|DT007584
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|294963909|gb|GW836784.1|GW836784
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|161718866|gb|FC067339.1|FC067339
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|110688813|gb|EE067797.1|EE067797
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|71864317|gb|DT013372.1|DT013372
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|71859940|gb|DT008995.1|DT008995
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|351047798|gb|FQ459018.1|FQ459018
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGATCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|71861519|gb|DT010574.1|DT010574
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|110727512|gb|EE104359.1|EE104359
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|71861538|gb|DT010593.1|DT010593
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|71863095|gb|DT012150.1|DT012150
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|110686619|gb|EE064467.1|EE064467
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
EST: gi|161715740|gb|FC066144.1|FC066144
EST:     GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAG                         GTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT
genomic: GGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttc ... tggaaactagGTGGCAAGATGCACAAAGATAATTAGCCCCAATTCTGAGGATGCCAAATAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATCAAGGAATCTGATACTGGCTTAGCTGCACCAAGTCAGTGGGATCTTGTTTCTGATAAGCAAATGATGCAGGAGGAGCAGCCTCTTCAGgtggtttttcttgattttgttgaacaacatttactgtcttaatataatgtatatctgaagagtggctggttttggaaactag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG