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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGTTCCACCACTGGATGTGCCAGAACTTTTGGCATATTTAGTGAGGCAATCTGGGCCATTTTTGGATCAACTTGGCTTCAAAACAGgtaagtaattgttttgaattttgttaattcaccatacctgcatgagtatgattagattcttatgcaagttgtcatatcatgtttcgttcgcacattaagt...

Basic information

species Vitis vinifera
transcript Vv08s0105g00260.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0105g00260.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os02g33580.1 (Oryza sativa), 5'ss of exon 3
GACGTTCCACCACTGGATGTGCCAGAACTTTTGGCATATTTAGTGAGGCAATCTGGGCCATTTTTGGATCAACTTGGCTTCAAAACAGgtaagtaattgttttgaattttgttaattcaccatacctgcatgagtatgattagattcttatgcaagttgtcatatcatgtttcgttcgcacattaagt
|| ||||| || || ||| || | ||| || ||||| || |||| |||||||||||||| |||||||||||||||||  | |  | ||||| | | |       ||   ||||   |  |  | | |  || ||  ||||     ||||||      | |  ||  ||| | |               
GAAGTTCCTCCTCTTGATCTGACTGAAATTATGGCAAATCTAGTTAGGCAATCTGGGCCCTTTTTGGATCAACTTGGTCTAAGGAGAGgtatgca-taaaaagcaacactgttgtatttcattccatttattag-gtgatggccctcttatatgctat-tggtactatggtgcag-------------

upper sequence: Vv08s0105g00260.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AC233887.1_FGT006 (Zea mays), 5'ss of exon 3
GACGTTCCACCACTGGATGTGCCAGAACTTTTGGCATATTTAGTGAGGCAATCTGGGCCATTTTTGGATCAACTTGGCTTCAAAACAGgtaagtaattgttttgaattttgttaattcaccatacctg-catgagtatgattagattcttatgcaagttgtcatatcatgtttcgttcgcacattaagt
|| |||||||||||| || |  | ||| || |||||||| | ||  ||||||||||||||||||| |||||||||||| |  | | ||||  | ||     |||  | || |  | || |||  | ||  |   || || | |   |||||| |    |   || | ||| | |               
GATGTTCCACCACTGCATCTAACTGAAATTGTGGCATATCTGGTTCGGCAATCTGGGCCATTTTTAGATCAACTTGGCATACAGAGAGgtttgaaacatcattgtttgtt-tggactctccagtcttggtacttgt-tgctgaccatcttattcttacta--atgttatggtgcag-------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294965488|gb|GW839059.1|GW839059
EST:     TTTAGTGAGGCAATCTGGGCCATTTTGGGATCAACTTGGCTTCAAAACAG                         ATATATGTGACAAGATAGTGGAGAGCTTGTGCAGCAAACGTAAGAACCAAC
genomic: TTTAGTGAGGCAATCTGGGCCATTTTTGGATCAACTTGGCTTCAAAACAGgtaagtaatt ... acaattacagATATATGTGACAAGATAGTGGAGAGCTTGTGCAGCAAACGTAAGAACCAAC