Sequence
atgc intronic sequence ATGC exonic sequenceGTGTTGATGTCAAGAAGATAGACCAATGTATTGGAGACCCTGAGGCAGATGTGGATAATCCAGTTCTTAAAGCTGAACAGGATGCACAGgtgaaagagactatctatgactaatactcttgtatattgtcttctcagattttgctgcttgcttgtattttattgtttgtgattttccattttctttgagttttggcttcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0058g01360.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G347541_T01 (Zea mays), 5'ss of exon 3
GTGTTGATGTCAAGAAGATAGACCAATGTATTGGAGACCCTGAGGCAGATGTGGATAATCCAGTTCTTAAAGCTGAACAGGATGCACAGgtgaaagagactatctatgactaatactcttgtatattgtcttct-cagattttgctgcttgcttgtattttattgtttgtgattttccattttctttgagttttggcttcag
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GCCTTGATCATAAAGCAATAGATAAGTGTATTGGTGATCCAGATGCAGATGAGGAAAACCATGTTCTGAAAGCTGAACAGGATGCACAGgttag------tactt-----caatgtgaatgcgtgatcttttctgttaatcttactgttgatctgaacaca-----taataatcatccactttgtatag-------------
upper sequence: Vv08s0058g01360.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G41070.3 (Glycine max), 5'ss of exon 3
GTGTTGATGTCAAGAAGATAGACCAATGTATTGGAGACCCTGAGGCAGATGTGGATAATCCAGTTCTTAAAGCTGAACAGGATGCACAGgtgaaagagactatctatga--ctaatactcttgtatattgtcttctcagattttgctgcttgcttg--tattttattgttt-gtga---ttttccattttctttgagttttggcttcag
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GTGCTGATCTGAAGAAGATTAAAGACTGCGTTGGAGATCCCCATGCAGATGTAGAAAATCCTGTTCTTAAGGCTGAACAGGATGCACAGgtt-----ggctttctaaaatgcaaacatttttttatgctatccttgtttttttttttttcatttaggcaattctgttgttttatgagtgtattgtaattttttctaacttcggtttcag
upper sequence: Vv08s0058g01360.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G14800.1 (Glycine max), 5'ss of exon 3
GTGTTGATGTCAAGAAGATAGACCAATGTATTGGAGACCCTGAGGCAGATGTGGATAATCCAGTTCTTAAAGCTGAACAGGATGCACAGgtgaaagagactatctatgactaatactcttgtatattgtcttctcagattttgctgcttgcttgtattttattgtttgtgattttccattttctttgagttttggcttcag
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GTGTTGATTTGAAGGAAATTAAAGATTGTGTTGGAAATCCTAGTGCAAATGCCGACAACCCTGTTCTTAATGCTGAACAGGATGCACAGgttg----gtcttacaggaggagaaattctta---attctgatggcattctattagggttgttcttgttctctaattag-gccattctgttggtttatgactttggtttcag
upper sequence: Vv08s0058g01360.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G00510.1 (Glycine max), 5'ss of exon 3
GTGTTGATGTCAAGAAGATAGACCAATGTATTGGAGACCCTGAGGCAGATGTGGATAATCCAGTTCTTAAAGCTGAACAGGATGCACAGgtgaaagagactatctatgactaatactcttgtatattgtcttctcagattttgct--gcttgcttgtattttattgtttgtgattttccattttctttgagttttggcttcag
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GTGTTGATTTGAAGAAAGTTAAAGACTGTGTTGGAGATCCTAGTGCAAATGCCGGAAACGCTGTTCTTAATGCTGAACAGGATGCACAGgttg----gtctttagaggaggagaacttctgaa----atctgatggcattcttctaggattatccttgttctctaattag-gccattctgttggtttctgactttggtttcag
upper sequence: Vv08s0058g01360.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G52850.1 (Arabidopsis thaliana), 5'ss of exon 3
GTGTTGATGTCAAGAAGATAGACCAATGTATTGGAGACCCTGAGGCAGATGTGGATAATCCAGTTCTTAAAGCTGAACAGGATGCACAGgtgaaagagactatctatgactaatactcttgtatattgtcttctcagattttgctgctt---gcttgtattttattgtttgtgattttccattttctttgagt--tttggcttcag------
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GCATTGATCTCAAAAAGGTGGACAAGTGTATCGGAGACCCTGAAGCAGATGTGGAGAACCCAGTTCTTAAAGCAGAGCAGGAGTCACAGgttt----gcctttttgtaactaattggctcttacacgtcttcccaagatcttgttggttttaagttgccatatattctccattcctcgaggtgttcttaaaatgagtctacttcaatttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|33405593|gb|CF211220.1|CF211220EST: GCTGAACAGGATGCACAG ATTGGCAAAGGCTCCCGTGGGGATGTGACTATATTGCCCACACTTGTAATA
genomic: GCTGAACAGGATGCACAGgtgaaagaga ... ttggcttcagATTGGCAAAGGCTCCCGTGGGGATGTGACTATATTGCCCACACTTGTAATA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTGTTGATGTCAAGAAGATAGACCAATGTATTGGAGACCCTGAGGCAGATGTGGATAATCCAGTTCTTAAAGCTGAACAGGATGCACAGgtgaaagagactatctatgactaatactcttgtatattgtcttctcagattttgctgcttgcttgtattttattgtttgtgattttccattttctttgagttttggcttcag
- - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG