Sequence
atgc intronic sequence ATGC exonic sequenceGAGATCGGATGGGCCATCCATTGATTGGAACACAAGAATGAAAGTTGCTTTATGTGCTGCACAGGGTCTCACTTTCTTGCATGAAGAAGGGCCTTTCCAGgtaagctgaaatcctgtctctgttcttttgaaggattaaaattgaaatagatggtacatgatcccccacatggtcaactagtaacacttctcagtttatg...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0058g01290.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G41160.1 (Glycine max), 5'ss of exon 3
GAGATCGGATGGGCCATCCATTGATTGGAACACAAGAATGAAAGTTGCTTTATGTGCTGCACAGGGTCTCACTTTCTTGCATGAAGAAGGGCCTTTCCAGgta-agctgaaatc-ctgtctctgttcttttgaaggatta-aaattgaaatagatggtacatgatcccccacatggtca-actagtaacacttctcagtttatg
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AAGATCTGATGGGCCATCAATTGATTGGAATACAAGAATGAAAATTGCTATATGTGCTGCACAAGGTCTAACTTTCTTGCATGAAGAAGGGCCTTTTCAGgtacaactataataacaataataatagtcttattccattgtgaggtcggctacatagattatacgatgtcattggattagactaaaccaaattcttagga----
upper sequence: Vv08s0058g01290.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G44630.1 (Glycine max), 5'ss of exon 2
GAGATCGGATGGGCCATCCATTGATTGGAACACAAGAATGAAAGTTGCTTTATGTGCTGCACAGGGTCTCACTTTCTTGCATGAAGAAGGGCCTTTCCAGgta-agctgaaatc-ctgtctctgttcttttgaaggattaaaattgaaatagatggtacatgatccc-ccacatggtcaactagtaacact-tctcagtttatg--------------------
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-AGATCTGATGGGCCATCAATTGATTGGAATACAAGAATGAAAATTGCTATATGTGCTGCACAAGGTCTAACCTTCTTGCACGAAGAGGGGCCTTTTCAGGtacaactataataacactttgttttgtttttcatagtatggagcgaatgatttcaagtatgttatgattattaggttaattatacactttatctttgctgacatccttctttctgcttgtagg
upper sequence: Vv08s0058g01290.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G04340.1 (Glycine max), 5'ss of exon 3
GAGATCGGATGGGCCATCCATTGATTGGAACACAAGAATGAAAGTTGCTTTATGTGCTGCACAGGGTCTCACTTTCTTGCATGAAGAAGGGCCTTTCCAGgtaa-gctgaaatcctgtctctgttcttttg---aaggattaaaattgaaatagatggtacatgatcccccacatggtcaactagta-acacttctcagtttatg
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GAGATCTGATAGCCCTTCAATTGATTGGAACTCACGAATGAAAATTGCCATATGTGCTGCACAAGGTCTTACTTTCTTGCATGAAGAAGGGCCTTTCCAGgtaatgattgtaggcaatgtataatgattggcgtaaaaatgtatgtcaaatatgttcaaaactgaagcaaccttttgtggtcttgtctgcactttttacc-----
upper sequence: Vv08s0058g01290.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G32800.1 (Glycine max), 5'ss of exon 3
----------------------------------GAGATCGGATGGGCCATCCATTGATTGGAACACAAGAATGAAAGTTGCTTTATGTGCTGCACAG-GGTCTCACTTTCTTGCATGAAGAAGGGCCTTTCCAGgtaagctgaaatcctgtctctgttcttttgaaggattaaaattgaaatagatggtacatgatcccccacatggtcaactagtaacacttctcagtttatg
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TATGCCATGGAAGCTTGGACCGCCAGTTGTTTGGGAGATCTGATGGTTCTTCAATTGATTGGAACTCGCGAATGAAAATTGTCATATGTGCTGCACAAAGgtcttactttcttgcatgaagaagggccattccaggtaa-tgaactttctgtttttag-----------------------------------------------------------------------------
upper sequence: Vv08s0058g01290.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G08760.1 (Arabidopsis thaliana), 5'ss of exon 3
GAGATCGGATGGGCCATCCATTGATTGGAACACAAGAATGAAAGTTGCTTTATGTGCTGCACAGGGTCTCACTTTCTTGCATGAAGAAGGGCCTTTCCAGgtaagctgaa--atcctgtctctgttcttttgaag--gattaaaattgaaatagatggtacatgatcccccacatggtcaactagtaacacttctcagtttatg
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GAGATCAGATGGGCCTCCTCTTGATTGGAACACTAGAATGAAGATTGCACTATGCGCAGCTCAGGGTCTAACCTTCTTGCACGAAGAAGGCCCTTTTCAGgtacgctaaacaaaactccatcaacatttgtgaatttgggtggtaacaaggtttgttgtgattgagcccttttcttcctctgtatgaacag-------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71878162|gb|DT027217.1|DT027217EST: TATGTGCTGCACAGGGTCTCACTTTCTTGCATGAAGAAGGGCCTTTCCAG GCTATGTACAATGAATTTTCAACTGCCAATATACAGATTGACAAG
genomic: TATGTGCTGCACAGGGTCTCACTTTCTTGCATGAAGAAGGGCCTTTCCAGgtaagctgaa ... gtgtttacagGCTATGTACAATGAATTTTCAACTGCCAATATACAGATTGACAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GAGATCGGATGGGCCATCCATTGATTGGAACACAAGAATGAAAGTTGCTTTATGTGCTGCACAGGGTCTCACTTTCTTGCATGAAGAAGGGCCTTTCCAGgtaagctgaaatcctgtctctgttcttttgaaggattaaaattgaaatagatggtacatgatcccccacatggtcaactagtaacacttctcagtttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccccac