Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaatgaaaaataataaaccatgaagcctgattggttttcctatgctgttttcctgttatctagttgtagtgtttttatttttctattattttttgggtgcag

Basic information

species Vitis vinifera
transcript Vv08s0058g00390.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G05370.1 (Glycine max), 5'ss of exon 2
GCTAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaatgaaaaataataaaccatgaagcctgattggttttcctatgctgttttcctgttatctagttgtagtgt-ttttatttttctattattttttgggtgcag
|| ||||| |||||||| |||||||||||||| |||||||| |||||||||||||||||||| || || |||||||||||||||    ||||  |  |  | | |      | |   ||||||   ||    |||| | |||      ||   | | ||||   | | ||                 
GCGAGAGGATTGAAGAAGCATTTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagt----gaaagttgctttatctt-----tttaacagttttcaggtgtgcatttcattttaaaagactgatatatatttttcctgtttag----------------

upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA14G06170.1 (Glycine max), 5'ss of exon 2
GCTAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaatgaaaaataataaaccatgaagcctgattggttttcctatgctgttttcctgttatctagttgtagtgtttttatttttctattattttttgggtgcag
||||| ||  | ||||| |||||||| ||||||||||| ||||||||||||||||||||||| || || |||||||||||||||    ||||| | |   |   || | || |      |||   | | | || |  ||    ||  |   |   |||||  |  | |||                
GCTAGGGGACTAAAGAAGCATTTGAAAAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagt----gaaaatttaatcattttgtaaccag------ttttgaagggtattattttgaagactgatgtgaacctttttcatcctgtatag--------------

upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA02G43080.2 (Glycine max), 5'ss of exon 2
GCTAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaatgaaaaataataaaccatgaagcctgattggttttcctatgctgttttcctgttatctagt-tgtagtgtttttatttttctattattttttgggtgcag
||||| || |||||||| ||| | |||||||||||||| ||||||||||||||||||||||| || || |||||||||||||||    ||||  |       ||| |  | || |    |||   |   | || |  |     ||  | || |   |||| ||  |  ||                 
GCTAGGGGATTGAAGAAGCATCTCAAGAGGCTCAATGCTCCTAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagt----gaaactt------tcatcattcttggtccagttttgaagtgtattattttaaagactgatgtgaaacattttcatcctg-tacag--------------

upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA16G23730.1 (Glycine max), 5'ss of exon 2
GCTAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaatgaaaaataataaaccatgaagcctgattggttttcctatgctgttttcctgttatctagttgtagtgtttttatttttctattattttttgggtgcag
|| ||||| || ||||| ||| |||||||||| |||||||| |||||||||||||||||||| || || |||||||||||||||    ||||| |  |  | | |      |||   ||||||  | | ||  || |    || ||  || | | |||||  || | ||                 
GCGAGAGGATTAAAGAAGCATCTGAAGAGGCTTAATGCCCCAAAGCATTGGATGCTTGACAAACTGGGTGGTGCATTTgtaagt----gaaaatttctttatctt-----ttgaaaagttttca-aggatgcatttcaaagatttatgtggacttttttttcttgtttag----------------

upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S39_422V6.1 (Physcomitrella patens), 5'ss of exon 1
----------------------GCTAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaatgaaaaataataaaccatgaagcctgattggttttcctatgctgttttcctgttatctagttgtagtgtttttatttttctattattttttgggtgcag
                      ||| | ||  | ||||| ||||||||| | || |||||||||| |||||||||||| |||||| | || |||||||| ||||||   || |  || |  || |     | ||  |||  ||||| |     |||||    | |  |  ||  |||  |          |  |   ||  |||    
TGATGTCACACTTCTTTGGCAGGCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttt-tgcattatgaccaatctcttcgtcttgttg--tttcccac----ttttctgactgttaaaatg-ggtgcatcagaaacctcaccagaattatggttttc

upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S39_422V6.3 (Physcomitrella patens), 5'ss of exon 2
GCTAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaatgaaaaataataaaccatgaagcctgattggttttcctatgctgttttcctgttatctagttgta---gtgtttttattttt-ctattattttt-tgggtgcag------------------------------------------------------------------------------------------
||| | ||  | ||||| ||||||||| | || |||||||||| |||||||||||| |||||| | || |||||||| ||||||   || |  || |  || |     | ||  |||  ||||| |   |  |  |   | |  | | || |   |     | |       |||  ||||  | ||    |                                                                                          
GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttt-tgcattatgaccaatctcttcgtcttgttg--tttcccacttttctgactgttaaaatgggtgcatcagaaacctcaccagaattatggttttcattggcatgggaattagatgatgtattggtttgaatgtgacacccttcaaagggagaataccgtcaccacattgatccaggaattatatcatgattctag

upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S2_16V6.1 (Physcomitrella patens), 5'ss of exon 2
GCTAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtca-atgaaaaataataaaccatgaagcctgattggttttcc--tatgctgttttcctgttatctagttgtagtgtttttatttttctattattttttgggtgcag
||| | || |||||||| |||||||||||||||||||| || | ||| ||||||||||||||| | || ||||| |||||||||   |          | |  |   | |    || |   | |   || ||  || ||    |||||    |    |  | |   | ||    | ||           
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAGGCACTGGATGCTTGACAAGTTGGGTGGTGCCTTTgtaagttttacatcttgcttttatactcaacgttcaatcgtcatgctagtacgcatttctctgactatctcagggattcgaatgtcagtctcagcgaatt-----------

upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S39_422V6.2 (Physcomitrella patens), 5'ss of exon 2
GCTAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaatgaaaaataataaaccatgaagcctgattggttttcctatgctgttttcctgttatctagttgtagtgtttttatttttctattattttttgggtgcag
||| | ||  | ||||| ||||||||| | || |||||||||| |||||||||||| |||||| | || |||||||| ||||||   || |  || |  || |     | ||  |||  ||||| |     |||||    | |  |  ||  |||  |          |  |   ||  |||    
GCTCGGGGTCTAAAGAAGCATTTGAAGCGACTGAATGCCCCTAGGCATTGGATGCTCGACAAGTTGGGTGGTGCATTCgtaagttt-tgcattatgaccaatctcttcgtcttgttg--tttcccac----ttttctgactgttaaaatg-ggtgcatcagaaacctcaccagaattatggttttc

upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S81_172V6.1 (Physcomitrella patens), 5'ss of exon 2
GCTAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaatgaaaaataataaaccatgaagcctgattggttttcctatgctgttttcctgttatctagttgtagtgtttttatttttctattattttttgggtgcag
||| | || |||||||| |||||||||||||||||||| || |||||||||||||| |||||  | || || || ||||| |||   |  |   | |       ||  |  |   ||| ||   |   ||||  |          ||   |  ||    |       ||   ||||    ||    
GCTCGTGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTCGACAAATTGGGTGGCGCCTTTgtgagttcttttactttgacctgaattggtgttt--ctggcttcgttgatctgtaataggaacgcacagggttcctggagctgccccctta--gttttcgaagt----

upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S282_25V6.1 (Physcomitrella patens), 5'ss of exon 2
GCTAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaatgaaaaataataaaccatgaagcctgattggttttcctatgctgtt--ttcctgttatctagttgtagtgtttt-tatttttctattattttttgggtgcag
||| | || |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| || || || || || |||      |  ||  | |||  ||||  |  |    | ||  |  || |    |  ||  |||||||| | | ||||   ||   ||||   ||        |||  
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCGCCTAAGCATTGGATGCTTGACAAGCTGGGTGGCGCCTTCgtgagt------accattttgaac--tgaattcatacctatgtttgtgagcggaaggtggcttgtatctagt-gcactgttagataggcttcttaaatgaaacttttgc--

upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S461_1V6.1 (Physcomitrella patens), 5'ss of exon 2
GCTAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaatgaaaaataataaaccatgaagc-ctgattggttttcctatgctgttttcctgttatctagttgtagtgtttttatttttctattattttttgggtgcag
||| | || |||||||| ||| |||||||||||||||| || ||||||||||||||||||||| | || ||||| || || |||   |      | |    |||   | | |||  |  |  |  | |    |  |  | |        |   |||   | | |   | |      ||         
GCTCGTGGTTTGAAGAAGCATCTGAAGAGGCTCAATGCGCCCAAGCATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtgagttcctagcccttgacttcccacctatctctgcatcctcattttttaaaatccttttataggtggcattctgtggaatgaatcgcccacctacctt---------

upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S38_194V6.1 (Physcomitrella patens), 5'ss of exon 2
GCTAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaatgaaaaataataaaccatgaagcctgattggttttcctatgctgttttcctgttatctagttgtagtgtttttatttttctattattttttgggtgcag
||| | || |||||||| |||||||||||||||||||| || |  |||||||||||||||||| | || ||||| || ||||||      |   | |   |   |      || | |   |   | ||  |   || ||   |   ||||| ||  | || ||   | | |  | || |       
GCTCGCGGTTTGAAGAAGCATTTGAAGAGGCTCAATGCTCCCAGACATTGGATGCTTGACAAGTTGGGTGGTGCCTTCgtaagtt--ctcacgttgacctaatttcgctgatgctagtactatttgtgtcgacgtcgtga-gttaggttgtggttatatttttacccgaattctcttcgac-----

upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ26570 (Selaginella moellendorffii), 5'ss of exon 2
GCTAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaatgaaaaataataaaccatgaagcctgattggttttcctatgctgttttcctgttatctagttgtagtgtttttatttttctattattttttgggtgcag
|   | |||  |||||| ||| |||||  |||||||||||| ||||||||||||||   |||||| || ||||| || |||||||  |         |         ||   |||  ||   |  | |  |   |    || || ||                                       
GTGCGCGGGCCGAAGAAGCATCTGAAGGTGCTCAATGCCCCCAAGCATTGGATGCTGAGCAAGCTCGGCGGTGCCTTCgtaagtctctcttcccctttgtttttcccaggtagatccgtgcgctcacggcggccttgc-ttttccag---------------------------------------

upper sequence: Vv08s0058g00390.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: EFJ14824 (Selaginella moellendorffii), 5'ss of exon 2
GCTAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaatgaaaaataataaaccatgaagcctgattggttttcctatgctgttttcctgttatctagttgtagtgtttttatttttctattattttttgggtgcag
|   | |||  |||||| ||| | |||  |||||||||||| ||||||||||||||   |||||| || ||||| |||||||||   ||        |        | |   |||  ||   |  | |  |   |    || || ||                                       
GTGCGCGGGCCGAAGAAGCATCTCAAGGTGCTCAATGCCCCCAAGCATTGGATGCTGAGCAAGCTCGGCGGTGCCTTTgtaagtatctgttcccctttgttgtcccaggta-gatccgtgcgctcacggcggccttgc-ttttccag---------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110701499|gb|EE079143.1|EE079143
EST:     GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
EST: gi|110380109|gb|EC945352.1|EC945352
EST:     GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
EST: gi|110727191|gb|EE103670.1|EE103670
EST:     GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
EST: gi|161714436|gb|FC064435.1|FC064435
EST:     GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
EST: gi|349830589|gb|FQ416887.1|FQ416887
EST:     GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
EST: gi|37188096|gb|CF607447.1|CF607447
EST:     GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
EST: gi|161714548|gb|FC063544.1|FC063544
EST:     GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
EST: gi|161719924|gb|FC065787.1|FC065787
EST:     GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
EST: gi|351017691|gb|FQ436044.1|FQ436044
EST:     GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
EST: gi|37184024|gb|CF603378.1|CF603378
EST:     GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
EST: gi|352795435|gb|FQ476550.1|FQ476550
EST:     GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
EST: gi|110688704|gb|EE067560.1|EE067560
EST:     GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
EST: gi|110374495|gb|EC939285.1|EC939285
EST:     CATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: CATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
EST: gi|110698624|gb|EE076338.1|EE076338
EST:     GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
EST: gi|110710513|gb|EE086912.1|EE086912
EST:     GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
EST: gi|71868661|gb|DT017716.1|DT017716
EST:     GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
EST: gi|351034241|gb|FQ448038.1|FQ448038
EST:     GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
EST: gi|110690211|gb|EE067114.1|EE067114
EST:     GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
EST: gi|161717451|gb|FC069225.1|FC069225
EST:     GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
EST: gi|33405551|gb|CF211178.1|CF211178
EST:     GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
EST: gi|33408549|gb|CF214176.1|CF214176
EST:     GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
EST: gi|351018729|gb|FQ425631.1|FQ425631
EST:     GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
EST: gi|161718530|gb|FC065367.1|FC065367
EST:     GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
EST: gi|349832530|gb|FQ421091.1|FQ421091
EST:     GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
EST: gi|110688682|gb|EE067514.1|EE067514
EST:     GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTT                         GCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG
genomic: GGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaat ... ttgggtgcagGCACCCAAGCCATCGTCTGGACCACATAAATCCAGGGAATGCTTGCCCTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTAGAGGGTTGAAGAAACATTTGAAGAGGCTCAATGCCCCTAAGCATTGGATGCTTGACAAGCTTGGAGGTGCATTTgtaagtcaatgaaaaataataaaccatgaagcctgattggttttcctatgctgttttcctgttatctagttgtagtgtttttatttttctattattttttgggtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG