Sequence
atgc intronic sequence ATGC exonic sequenceGTTATGCACGGGGCAGATCGGGATATCATTTGGCTTCAACGGGATTTTGGCATATACATCTGCAACATGTTTGATACCGGACAGgtttgctttgaaacagtagtttatttggattctgggattttgtacaagccttttttctgcttcatggcattttagacgaaaattatttagaatgactggt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0056g01320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os10g30100.1 (Oryza sativa), 5'ss of exon 4
GTTATGCACGGGGCAGATCGGGATATCATTTGGCTTCAACGGGATTTTGGCATATACATCTGCAACATGTTTGATACCGGACAGgtttgctttgaaacagtagtttatttggattctgggattttgtacaa-gccttttttctgc----ttcatggcatt-ttagacgaaaattatttagaatgactggt--------------
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GTAATGCATGGTGCAGATCGTGATATAATATGGCTTCAACGGGACTTTGGCATATATGTATGCAACCTTTTTGACACAGGCCAGgtatagt--gcaacattagctggatagcggcatggtgctttgcattacagctctgttttgcaaatttgattaaatcatcatattgttattctgttaaccgaagcttgacattacaaacag
upper sequence: Vv08s0056g01320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT1G54440.2 (Arabidopsis thaliana), 5'ss of exon 4
GTTATGCACGGGGCAGATCGGGATATCATTTGGCTTCAACGGGATTTTGGCATATACATCTGCAACATGTTTGATACCGGACAGgtttgctttgaaacagtagtttatttggattctgggattttgtacaagccttttt----tctgcttcatggcattttagacgaaaattatttagaatgactggt
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GTAATCCATGGAGCAGATCGAGATATTATTTGGCTTCAACGGGACTTTGGCATTTATGTCTGCAATCTTTTTGACACAGGACAGgtttgatttctggt--tattttgttttgacatggtcatattacttggaggtgtatgagatcaccttaacagaacccattttggtagtaatgtagaa-gaatga-
upper sequence: Vv08s0056g01320.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G35910.1 (Arabidopsis thaliana), 5'ss of exon 4
GTTATGCACGGGGCAGATCGGGATATCATTTGGCTTCAACGGGATTTTGGCATATACATCTGCAACATGTTTGATACCGGACAGgtttg-ctttgaaacagtagtttatttggattctgggattttgtacaagccttttttctgcttcatggcattttagacgaaaattatttagaatgactggt-----
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GTAATGCATGGAGCAGATCGAGATATTATCTGGCTTCAACGGGACTTCGGCATATATGTCTGCAATCTCTTTGACACAGGACAGgtttgattttgtttcagcgatgatcttctatttt-----tttctatga-catttcctgtaaaacataggagatccagtatccataacatacaccttttgctttatgMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|352774123|gb|FQ474646.1|FQ474646EST: TTCAACGGGATTTTGGCATATACATCTGCAACATGTTTGATACCGGACAG GCCTCAAGGGTACTGAAATTGGAAAGAAATAGTCTGGAGCACCTTCTGCAC
genomic: TTCAACGGGATTTTGGCATATACATCTGCAACATGTTTGATACCGGACAGgtttgctttg ... ttaaccatagGCCTCAAGGGTACTGAAATTGGAAAGAAATAGTCTGGAGCACCTTCTGCAC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GTTATGCACGGGGCAGATCGGGATATCATTTGGCTTCAACGGGATTTTGGCATATACATCTGCAACATGTTTGATACCGGACAGgtttgctttgaaacagtagtttatttggattctgggattttgtacaagccttttttctgcttcatggcattttagacgaaaattatttagaatgactggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acgaaaa