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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTAAGGATGGTGAGGGTCAAGAAATTATCAAACCATATACCCCAACTACATTGGATTCTGATGTTGGATATTTTGAACTTGTTATAAAGgtttgtatctgattcttatattattggacttcgtaattggctttatttatttatttatttgtctcatttaaatctgtgtctgctatgtgtttttcctgtaaatag

Basic information

species Vitis vinifera
transcript Vv08s0056g01150.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0056g01150.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g59930.1 (Oryza sativa), 5'ss of exon 3
GGGTAAGGATGGTGAGGGTCAAGAAATTATCAAACCATATACCCCAACTACATTGGATTCTGATGTTGGATATTTTGAACTTGTTATAAAGgt---ttgtatctgattctt-atattattggacttcgtaattggctttattt--atttatttatttgtctcatttaaatctgtgtctgctatgtgtttttcctgtaaatag--
 ||  | |||| |   ||  ||||| | |||||||| |||||||| |||||||||||||||||| | ||  ||||||| |||||||| |||||   ||||||    ||||| ||| | |  || | | |  ||| |  |  |   |  |||   | |||  ||   ||  | |  | ||| || |   ||| ||   |||    
AGGACAAGATGCTACAGGCGAAGAAGTAATCAAACCTTATACCCCTACTACATTGGATTCTGATCTAGGGCATTTTGAGCTTGTTATTAAGgtaaattgtattcagttctttatactgtatgaatgcttgtttgtcaatcctggaacatatcgttatgtgccacacaag-caggatttgccatttaacttttctcataatgcag

upper sequence: Vv08s0056g01150.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G133213_T01 (Zea mays), 5'ss of exon 3
GGGTAAGGATGGTGAGGGTCAAGAAATTATCAAACCATATACCCCAACTACATTGGATTCTGATGTTGGATATTTTGAACTTGTTATAAAGgtttgtatctgattcttatattattggacttcgtaattggctttatttatttatttatttgtctcatttaaatctgtgtctgctatgtgtttttcctgtaaatag
 ||  | || | |   ||| ||||| | ||||| || |||||||| |||||||||||||||||| ||||||||||||| ||||| ||||||||   ||| |            || |   ||| |  || |  |  ||| | |  ||     ||  || |  |        | || |     |||     | | ||
AGGACAAGACGCTACAGGTGAAGAAGTAATCAAGCCTTATACCCCTACTACATTGGATTCTGATCTTGGATATTTTGAGCTTGTCATAAAGgtaaatatttag----------atcgattttccttgttcggatactttttatgctttgcactcatatgttgacacaccagttctttaatccttttgatcacacag

upper sequence: Vv08s0056g01150.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G157263_T01 (Zea mays), 5'ss of exon 3
GGGTAAGGATGGTGAGGGTCAAGAAATTATCAAACCATATACCCCAACTACATTGGATTCTGATGTTGGATATTTTGAACTTGTTATAAAGgtttgtatctgattcttatattattggacttcgtaattggctttatttatttatttatttgtctcatttaaatctgt-gtctgctatgtgtttttcctgtaaatag---------------------------------------------------
 ||  |||||| |   ||  | ||| | ||||| || ||||| ||||||||  |||| ||||||||||||| |||||| ||||||||||||||  || |   ||    ||         |  | |  ||  ||||   || | ||||  |||| || |  |  | |||  |      |  ||  |   || || ||                                                    
AGGACAGGATGCTTCTGGCGAGGAAGTGATCAAGCCTTATACTCCAACTACTCTGGACTCTGATGTTGGATCTTTTGAGCTTGTTATAAAGgtaagttttcaatgag-atgccccccccccccttttttttcttttcctagtcatttcattgtatc-tccagttgtgttatgcatcttcggtcatcgatgcaactatttgtgcactgttgtgattcaccacatgttttctttccttctcgtcgtgaag

upper sequence: Vv08s0056g01150.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G29720.1 (Glycine max), 5'ss of exon 3
GGGTAAGGATGGTGAGGGTCAAGAAATTATCAAACCATATACCCCAACTACATTGGATTCTGATGTTGGATATTTTGAACTTGTTATAAAGgtttgt-----atctgattcttatattattggacttcg-taattggctttatttatttatttatttgtctcatttaaatctgtgtctgctatgtgtttt-tcctgtaaatag
|||||| |||| | | ||| ||||  ||||||||||||||||||| |||||||||||||| ||||||||| |||||||||| ||||| ||||| | |     | |   |   |  ||  ||    ||   ||| |    |   |||||| ||| | |    | || |    || || | || | |    | | |  | | |||
GGGTAAAGATGCTCAAGGTGAAGACGTTATCAAACCATATACCCCTACTACATTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcagaacccattgacttcatccttacttttttctaacttatgtgcattattt-tttgtcttctcccttgatgattgggttttctgtctaaaatatgcattcattag

upper sequence: Vv08s0056g01150.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G00920.1 (Glycine max), 5'ss of exon 3
GGGTAAGGATGGTGAGGGTCAAGAAATTATCAAACCATATACCCCAACTACATTGGATTCTGATGTTGGATATTTTGAACTTGTTATAAAGgtttgtatctgattcttatattattggacttcgtaattggctttatttatttatttatttgtctcatttaaatctgtgtctgctatgtgtttttcctgtaaatag-----------
|||||| |||| | | ||| ||||  |||||||||||||||| || ||||| |||||||| ||||||||| |||||||||| ||||| ||||| | |     || | |  | |  |   | |  |  ||    | | |||| |   |  || | |  | |    |  ||  |  |  || ||    ||  |||||            
GGGTAAAGATGCTCAAGGTGAAGAGGTTATCAAACCATATACTCCTACTACTTTGGATTCCGATGTTGGACATTTTGAACTAGTTATTAAGgtatattcagaatccattgact--tcacccttatgttttttctaacttatgtgcattatt-ttttgtcttctcccttgattatttggttttcggtcta-aaatatgcatacattag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33406972|gb|CF212599.1|CF212599
EST:     CCCCAACTACATTGGATTCTGATGTTGGATATTTTGAACTTGTTATAAAG                         ATGTATCCACAAGGAAGGATGTCACATCATTTTCGAGAGATGCGTGTAGGT
genomic: CCCCAACTACATTGGATTCTGATGTTGGATATTTTGAACTTGTTATAAAGgtttgtatct ... ctgtaaatagATGTATCCACAAGGAAGGATGTCACATCATTTTCGAGAGATGCGTGTAGGT
EST: gi|110375510|gb|EC940502.1|EC940502
EST:     CCCCAACTACATTGGATTCTGATGTTGGATATTTTGAACTTGTTATAAAG                         ATGTATCCACAAGGAAGGATGTCACATCATTTTCGAGAGATGCGTGTAGGT
genomic: CCCCAACTACATTGGATTCTGATGTTGGATATTTTGAACTTGTTATAAAGgtttgtatct ... ctgtaaatagATGTATCCACAAGGAAGGATGTCACATCATTTTCGAGAGATGCGTGTAGGT
EST: gi|351024116|gb|FQ423539.1|FQ423539
EST:     CCCCAACTACATTGGATTCTGATGTTGGATATTTTGAACTTGTTATAAAG                         ATGTATCCACAAGGAAGGATGTCACATCATTTTCGAGAGATGCGTGTAGGT
genomic: CCCCAACTACATTGGATTCTGATGTTGGATATTTTGAACTTGTTATAAAGgtttgtatct ... ctgtaaatagATGTATCCACAAGGAAGGATGTCACATCATTTTCGAGAGATGCGTGTAGGT
EST: gi|110397391|gb|EC963126.1|EC963126
EST:     CCCCAACTACATTGGATTCTGATGTTGGATATTTTGAACTTGTTATAAAG                         ATGTATCCACAAGGAAGGATGTCACATCATTTTCGAGAGATGCGTGTAGGT
genomic: CCCCAACTACATTGGATTCTGATGTTGGATATTTTGAACTTGTTATAAAGgtttgtatct ... ctgtaaatagATGTATCCACAAGGAAGGATGTCACATCATTTTCGAGAGATGCGTGTAGGT
EST: gi|33406880|gb|CF212507.1|CF212507
EST:     CCCCAACTACATTGGATTCTGATGTTGGATATTTTGAACTTGTTATAAAG                         ATGTATCCACAAGGAAGGATGTCACATCATTTTCGAGAGATGCGTGTAGGT
genomic: CCCCAACTACATTGGATTCTGATGTTGGATATTTTGAACTTGTTATAAAGgtttgtatct ... ctgtaaatagATGTATCCACAAGGAAGGATGTCACATCATTTTCGAGAGATGCGTGTAGGT
EST: gi|351015566|gb|FQ426808.1|FQ426808
EST:     CCCCAACTACATTGGATTCTGATGTTGGATATTTTGAACTTGTTATAAAG                         ATGTATCCACAAGGAAGGATGTCACATCATTTTCGAGAGATGCGTGTAGGT
genomic: CCCCAACTACATTGGATTCTGATGTTGGATATTTTGAACTTGTTATAAAGgtttgtatct ... ctgtaaatagATGTATCCACAAGGAAGGATGTCACATCATTTTCGAGAGATGCGTGTAGGT