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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGGTGAACTCCATGAAAGAAGCCACTGGCAAGGAACTTTTGCGTGTTTCTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattggatatgtactcttctttcttgctcagacaattaccaaaatcataaataaatggaaaataattatgcttttacattggatctctgcacacag...

Basic information

species Vitis vinifera
transcript Vv08s0056g00620.t01
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|349832600|gb|FQ421958.1|FQ421958
EST:     CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG                         AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: gi|110698903|gb|EE076929.1|EE076929
EST:     CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG                         AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: gi|30133266|gb|CB918605.1|CB918605
EST:     CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG                         AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: gi|110423860|gb|EC990211.1|EC990211
EST:     CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG                         AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: gi|110723106|gb|EE100040.1|EE100040
EST:     CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG                         AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: gi|351023437|gb|FQ432820.1|FQ432820
EST:     CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG                         AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: gi|294963783|gb|GW836633.1|GW836633
EST:     CTGATGACACAAATGGATACAAAATGCTTCTTAAGGGTTTGATTGTTCAG                         AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: gi|110378220|gb|EC943340.1|EC943340
EST:     CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG                         AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: gi|351013904|gb|FQ434056.1|FQ434056
EST:     CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG                         AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: gi|110376043|gb|EC941082.1|EC941082
EST:     CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG                         AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: gi|110411460|gb|EC977174.1|EC977174
EST:     CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG                         AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: gi|110702891|gb|EE079258.1|EE079258
EST:     CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG                         AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: gi|351017341|gb|FQ435693.1|FQ435693
EST:     CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG                         AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: gi|294966352|gb|GW837603.1|GW837603
EST:     CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG                         AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: gi|349819240|gb|FQ412134.1|FQ412134
EST:     CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG                         AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: gi|110702889|gb|EE079256.1|EE079256
EST:     CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG                         AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: gi|161718482|gb|FC066332.1|FC066332
EST:     CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG                         AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: gi|110687935|gb|EE065911.1|EE065911
EST:     CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG                         AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: gi|110411538|gb|EC977258.1|EC977258
EST:     CTTAAAGGTTTGATTGTTCAG                         AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: gi|77587268|gb|DV222769.1|DV222769
EST:     CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG                         AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: gi|110702890|gb|EE079257.1|EE079257
EST:     CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG                         AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: gi|110362618|gb|EC926164.1|EC926164
EST:     CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG                         AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: gi|71859327|gb|DT008382.1|DT008382
EST:     CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG                         AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
EST: gi|351015182|gb|FQ445466.1|FQ445466
EST:     CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAG                         AGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT
genomic: CTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattgg ... caactgccagAGTTTACTACGACTGAAGGAGCCAGCAGTGTTGCTGCGCTGCAGAGAGATT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCTGGTGAACTCCATGAAAGAAGCCACTGGCAAGGAACTTTTGCGTGTTTCTGATGACACAAATGGATACAAAATGCTTCTTAAAGGTTTGATTGTTCAGgtagtattggatatgtactcttctttcttgctcagacaattaccaaaatcataaataaatggaaaataattatgcttttacattggatctctgcacacag

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