Sequence
atgc intronic sequence ATGC exonic sequenceCTGAAATGGTAAGAAGGCAAGCTTTATTTCCGGGTGACTCCGAGTTTCAACAACTGCTTCATATATTCAGgtattttattcggacgagtcatacatcaaaatattttgtagacatgcttcctaacagtttctttctctcacaagttttgttataaatgtggttttgtttt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0056g00210.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G54180.1 (Arabidopsis thaliana), 5'ss of exon 2
CTGAAATGGTAAGAAGGCAAGCTTTATTTCCGGGTGACTCCGAGTTTCAACAACTGCTTCATATATTCAGgtattttattcggacgagtcat-acatcaaaatattttgtag-acatgcttcctaacagtttctttctctcacaagttttgttataaatgtggttttgtttt
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CTGAGATGGTTCGGAGGCAAGCTCTTTTCCCTGGTGATTCTGAGTTTCAGCAATTGCTTCATATCTTCAGgtattttgaatttaccttccattacttcttctggttttgtcctgtttcagtgtgaattgcatcactgaatgatatgctagcttaccaattgagaacaact--
upper sequence: Vv08s0056g00210.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT2G38620.2 (Arabidopsis thaliana), 5'ss of exon 2
CTGAAATGGTAAGAAGGCAAGCTTTATTTCCGGGTGACTCCGAGTTTCAACAACTGCTTCATATATTCAGgtattttattcggacgagtcatacatcaaaatattttgtagacatgcttcctaacagtttctttctctcacaagttttgt---tataaatgtggttttgtttt-------------------------------------------------------
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CCGAGATGATTAGGAGGCAAGCTCTTTTCCCTGGTGATTCTGAGTTTCAGCAACTACTTCATATTTTCAGgtatttgcttcttgtttttgatgc--caatgtgtat-gtatacaggaaccagtttaggactttagcccattaggttcagtactcgtgaactcatttggattatggggactgtctagtatcaatatatctgaagtatggttttgttttgggttctggagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110387384|gb|EC952045.1|EC952045EST: GCTTTATTTCCGGGTGACTCCGAGTTTCAACAACTGCTTCATATATTCAG GTTGTTGGGAACGCCAACTGAGAAACAGTGGCCTGGAGTTAGTTCTCTGAG
genomic: GCTTTATTTCCGGGTGACTCCGAGTTTCAACAACTGCTTCATATATTCAGgtattttatt ... ttggaaaaagGTTGTTGGGAACGCCAACTGAGAAACAGTGGCCTGGAGTTAGTTCTCTGAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTGAAATGGTAAGAAGGCAAGCTTTATTTCCGGGTGACTCCGAGTTTCAACAACTGCTTCATATATTCAGgtattttattcggacgagtcatacatcaaaatattttgtagacatgcttcctaacagtttctttctctcacaagttttgttataaatgtggttttgtttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcac