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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGCTTTAAGTATATCAAGGAGTGTTTTGAAACTGGCACATTGCACCTCATTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAAgtatgttttgttgttgaattctattaccttgtgattggatatagttttgtatttcccaggggagatcatgatcctctttggctttttctcttggcag

Basic information

species Vitis vinifera
transcript Vv08s0056g00200.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0056g00200.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os01g60190.2 (Oryza sativa), 5'ss of exon 3
AGGCTTTAAGTATATCAAGGAGTGTTTTGAAACTGGCACATTGCACCTCATTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAAgtatgttttgttgttgaattctattaccttgtgattggatatagttttgtatttcccaggggagatca---tgatcctctttggctttttctcttggcag
 || || || || ||||| || |||||||| |  || ||  ||||||| ||||| |||||||||||||| || || ||||||||| |||||||  |||| || ||||  | |  |||    |    |||| |  |   || | ||| | ||||| |         | |   || |    | ||  |   ||| ||  |||
GGGGTTCAATTACATCAAAGAATGTTTTGACAAGGGTACCCTGCACCTTATTGGTTTGTTGAGTGATGGAGGCGTTCACTCCCGTCTTGATCAAGTGCAGgtttgttaagct-ctgatgaatggcgccttatattgcaatgt-gttgtttatttactgtcaatttttaaattggtgtgttctgtttcactctattt-cag

upper sequence: Vv08s0056g00200.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM5G833389_T01 (Zea mays), 5'ss of exon 4
AGGCTTTAAGTATATCAAGGAGTGTTTTGAAACTGGCACATTGCACCTCATTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAAgtatgttt-tgttgttgaattctattaccttgtgattggatatagttttgtatttcccaggggagatcatgatcctctttggctttttctcttggcag----------------------------------------------------------------------------
 || || || || ||||| || | |||||||| ||| ||  | ||||| |||||||||||||||||||| ||||||||||||||| |||||||  |||| || || |  | || ||   |    ||| | || | |  | ||  |        ||  |        |  ||   |||| |  |  || ||  ||  ||                                                                            
TGGGTTCAACTACATCAAAGAATCTTTTGAAAGTGGTACTCTTCACCTTATTGGGTTGTTGAGTGATGGTGGTGTCCACTCCCGTCTTGATCAACTGCAGgtttgctaatattctttcttcaatttagcctg-gttcagttactgccacaagatttactataatttttttggggctctatc-cagttacttctgaaaggtgtcagtgagagaggggcgaaaaaaatccgtgtgcacatccttactgatggacgtgatgttttggatggaagcag

upper sequence: Vv08s0056g00200.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM5G833389_T02 (Zea mays), 5'ss of exon 4
AGGCTTTAAGTATATCAAGGAGTGTTTTGAAACTGGCACATTGCACCTCATTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAAgtatgttttgttgttgaattctattaccttgtgattggatatagttttgtatttcccagggga--gatcatgatcctctttggctttttctcttggcag
 || || || || ||||| || | |||||||| ||| ||  | ||||| |||||||||||||||||||| ||||||||||||||| |||||||  |||| || || |         |||  | || | |    |||     | |||  ||   | |||   ||   |  || ||  | |||||   | | ||  |    
TGGGTTCAACTACATCAAAGAATCTTTTGAAAGTGGTACTCTTCACCTTATTGGGTTGTTGAGTGATGGTGGTGTCCACTCCCGTCTTGATCAACTGCAGgtttgct---------aatattctttcttca--atttagcctggttcagttactgccacaagatttactataatttt-tttggggctctatccag----

upper sequence: Vv08s0056g00200.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G003385_T02 (Zea mays), 5'ss of exon 4
AGGCTTTAAGTATATCAAGGAGTGTTTTGAAACTGGCACATTGCACCTCATTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAAgtatgttttgttgttgaattctattaccttgtgattggatatagttttgtatttcccaggggagatcatgatcctctttggctttttctcttggcag
 || || || || ||||| || | |||||||| ||| ||  | ||||| |||||||||||||||||||| ||||||||||||||  |||| ||  |||| ||     ||| |  | |  | ||||   ||   ||| | || ||||       | |||        || |||   ||||   ||  ||| |   |||
TGGGTTCAACTACATCAAAGAATCTTTTGAAAATGGTACTCTTCACCTTATTGGGTTGTTGAGTGATGGTGGTGTCCACTCCCGCCTTGACCAACTGCAGgt-----ttgctaataatctttattcaatttatattagtta-agttacaagcgtacca--------caagatttacttttatttgctctatc--cag

upper sequence: Vv08s0056g00200.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G053420_T01 (Zea mays), 5'ss of exon 5
AGGCTTTAAGTATATCAAGGAGTGTTTTGAAACTGGCACATTGCACCTCATTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAAgtatgttttgttgttgaattctattaccttgtgattggatatagttttgtatttcccaggggagatcatgatcctctttggctttttctcttggcag
 || || || || ||||| || | |||||||| ||| ||  | ||||| ||| |||||||||||||||| ||||||||||||||  |||| ||  | || || || |      |   |||   | |  || | ||| |                                                           
TGGGTTCAATTACATCAAAGAATCTTTTGAAAATGGTACTCTTCACCTTATTAGGTTGTTGAGTGATGGTGGTGTCCACTCCCGCCTTGACCAACTACAGgtttgcta----ataatatttcttcaatttat-attag-----------------------------------------------------------

upper sequence: Vv08s0056g00200.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA18G45120.1 (Glycine max), 5'ss of exon 4
AGGCTTTAAGTATATCAAGGAGTGTTTTGAAACTGGCACATTGCACCTCATTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAAgt-atgttttgttgttgaattctattaccttgtgattggatatagttttgtatttcccaggggagatcatgatcctctttggctttttctcttggcag
||| || ||||| || ||||| |||||||||| |||||||||||| ||||||||| |  |||||||||| || || |||||| |  ||||||||||||| || ||  ||||  |||| |     ||  | |     || ||  |||||  | ||||  |      |   |  | |                       
AGGTTTCAAGTACATAAAGGAATGTTTTGAAAATGGCACATTGCATCTCATTGGGCTACTGAGTGATGGTGGAGTTCACTCCAGACTTGATCAGTTGCAGgtgattatttggggttggagctgtttttccttcatgtgtattcagtttattctttctaactaactacttttgtacag---------------------

upper sequence: Vv08s0056g00200.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA09G40690.1 (Glycine max), 5'ss of exon 3
AGGCTTTAAGTATATCAAGGAGTGTTTTGAAACTGGCACATTGCACCTCATTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAAgt-atgttttgttgttgaattctattaccttgtgattggatatagttttgtatttcccaggggagatcatgatcctctttggctttttctcttggcag
||| || ||||| || |||||  ||||||||| |||||||||||| |||||||||||  |||||||||| || || |||||| |  ||||||||||||| || ||  ||||  |||| | |   ||  | |     || ||| |||||  | ||||  |      ||  |  | |                       
AGGTTTCAAGTACATAAAGGAAAGTTTTGAAAATGGCACATTGCATCTCATTGGGTTACTGAGTGATGGTGGAGTTCACTCCAGACTTGATCAGTTGCAGgtgattatttggggttggagttgtttttccttcttgtgtatacagtttattctttctaactaagtatttttgtacag---------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110418028|gb|EC984140.1|EC984140
EST:     TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAA                         TTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
genomic: TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAAgtatgttttg ... ctcttggcagTTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
EST: gi|71858573|gb|DT007628.1|DT007628
EST:     TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAA                         TTACTTTTAAAAGGAGCTAGTGAGAATGGTGCNNNNNNNNTCCGTGTCCAT
genomic: TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAAgtatgttttg ... ctcttggcagTTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
EST: gi|110732942|gb|EE108671.1|EE108671
EST:     TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAA                         TTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
genomic: TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAAgtatgttttg ... ctcttggcagTTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
EST: gi|294965964|gb|GW839303.1|GW839303
EST:     TTGGGTTGTTGAGTGATGGTGGTGTCCACTCCCGTATTGATCAGTTGCAA                         TTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
genomic: TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAAgtatgttttg ... ctcttggcagTTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
EST: gi|110731939|gb|EE106787.1|EE106787
EST:     TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAA                         TTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
genomic: TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAAgtatgttttg ... ctcttggcagTTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
EST: gi|29785096|gb|CB341824.2|CB341824
EST:     TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAA                         TTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
genomic: TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAAgtatgttttg ... ctcttggcagTTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
EST: gi|110720962|gb|EE097416.1|EE097416
EST:     TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAA                         TTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
genomic: TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAAgtatgttttg ... ctcttggcagTTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
EST: gi|110357218|gb|EC920600.1|EC920600
EST:     TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAA                         TTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
genomic: TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAAgtatgttttg ... ctcttggcagTTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
EST: gi|71881840|gb|DT030895.1|DT030895
EST:     GTCCACTCCCGTATTGATCAGTTGCAA                         TTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
genomic: GTCCACTCCCGTATTGATCAGTTGCAAgtatgttttg ... ctcttggcagTTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
EST: gi|161715825|gb|FC067428.1|FC067428
EST:     TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAA                         TTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
genomic: TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAAgtatgttttg ... ctcttggcagTTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
EST: gi|110718255|gb|EE094880.1|EE094880
EST:     TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAA                         TTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
genomic: TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAAgtatgttttg ... ctcttggcagTTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
EST: gi|110721142|gb|EE097804.1|EE097804
EST:     TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAA                         TTACTTTTAAAAGGACCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
genomic: TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAAgtatgttttg ... ctcttggcagTTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
EST: gi|33409359|gb|CF214986.1|CF214986
EST:     TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAA                         TTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
genomic: TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAAgtatgttttg ... ctcttggcagTTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
EST: gi|110723612|gb|EE101122.1|EE101122
EST:     TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAA                         TTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT
genomic: TTGGGTTGTTGAGTGATGGCGGTGTCCACTCCCGTATTGATCAGTTGCAAgtatgttttg ... ctcttggcagTTACTTTTAAAAGGAGCTAGTGAGAATGGTGCAAAAAGAATCCGTGTCCAT