Sequence
atgc intronic sequence ATGC exonic sequenceTTTTTAAAGGTCCAAAAGAATGGGACAGTAGCACATGTGCCACCGCCTCGCCCAAAGCGCAAAGCTATTCATCCTTACCCACAAAAGGCACCAACAAATGgtttgtccctcttagtgaaaataaaaatatatttctgatgctggattcaatttaactgttggcattctgacatgcaatttcttgtaacaattaacag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g03220.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA13G19910.1 (Glycine max), 5'ss of exon 3
TTTTTAAAGGTCCAAAAGAATGGGACAGTAGCACATGTGCCACCGCCTCGCCCAAAGCGCAAAGCTATTCATCCTTACCCACAAAAGGCACCAACAAATGgtttgtccctcttagtgaaaataaaaatatatttctgatgctggattcaatttaactgttggcattctgacatgcaatttcttgtaacaattaacag
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TTCTTGAAAGTTCAAAAGAATGGGACAGTGGCACATGTGCCTCCTCCCCGTCCAAAGCGCAAAGCTGCTCATCCTTACCCACAAAAGGCATCAAAAAATGgtttgcttctatttg---agatgttgatat-tctctgcccttaaaggtgcaacatttcatgcatccctgacatgctactttctg----gttttccag
upper sequence: Vv08s0040g03220.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G05560.1 (Glycine max), 5'ss of exon 3
TTTTTAAAGGTCCAAAAGAATGGGACAGTAGCACATGTGCCACCGCCTCGCCCAAAGCGCAAAGCTATTCATCCTTACCCACAAAAGGCACCAACAAATGgtttgtccctcttagtgaaaataaaaatatatttctgatgctggattcaatttaactgttggcattctgacatgcaatttcttgtaacaattaacag
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TTCTTGAAAGTTCAAAAGAATGGGACTGTGGCACATGTGCCTCCTCCCCGTCCAAAGCGCAAAGCTGCTCATCCTTACCCGCAAAAGGCATCAAAAAATGgtttgtttctatttg---agatggcgatat-tctctgtccctaaaggtgcaacatttcatgcatccctgacatgctgctttctg----gttttccag
upper sequence: Vv08s0040g03220.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G36170.1 (Glycine max), 5'ss of exon 4
TTTTTAAAGGTCCAAAAGAATGGGACAGTAGCACATGTGCCACCGCCTCGCCCAAAGCGCAAAGCTATTCATCCTTACCCACAAAAGGCACCAACAAATGgtttgtccctcttagtgaaaataaaaatatatttctgatgctggattcaattta-actgttggcattctgacatgcaatttcttgtaacaattaacag
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TTCTTGAAAGTTCAAAAGAGCGGGACAGTAGCACATGTGCCTCCTCCTCGGCCTAAGCGCAAAGCTTCTCATCCTTATCCACAAAAGGCATCCAAAAATGgtttgattctatttaacacaatgatgttctgttccttaaaatc-acagaatgcatattgttgacatgctgttttatggtttggcag------------
upper sequence: Vv08s0040g03220.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G33440.1 (Glycine max), 5'ss of exon 3
TTTTTAAAGGTCCAAAAGAATGGGACAGTAGCACATGTGCCACCGCCTCGCCCAAAGCGCAAAGCTATTCATCCTTACCCACAAAAGGCACCAACAAATGgtttgtccctcttagtgaaaataaaaatatatttctga----tgctggattcaa---tttaac-tgttggcattctgacatgcaatttcttgtaacaattaacag----------------------------
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-------------------------CAGTAGCACACGTGCCTCCTCCTCGGCCTAAGCGCAAAGCTTCTCATCCTTATCCACAAAAGGCATCCAAAAATGGTTTGATTCTATTCAACACAATGATgttctgttccttaaaatcacagaatgcacattcttgacatgatgtttttatggtttggcagtt-ttgttgccattgccagcttccatggtttatgtttcttccactagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|349821355|gb|FQ410976.1|FQ410976EST: TACCCACAAAAGGCACCAACAAATG TTTTAGTGCCATTGCAAGCGTCTGTGGCATATCCTCCTTCATTGCATTCCC
genomic: TACCCACAAAAGGCACCAACAAATGgtttgtccct ... caattaacagTTTTAGTGCCATTGCAAGCTTCTGTGGCATATCCTTCTTCATTGCATTCCC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TTTTTAAAGGTCCAAAAGAATGGGACAGTAGCACATGTGCCACCGCCTCGCCCAAAGCGCAAAGCTATTCATCCTTACCCACAAAAGGCACCAACAAATGgtttgtccctcttagtgaaaataaaaatatatttctgatgctggattcaatttaactgttggcattctgacatgcaatttcttgtaacaattaacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG