Sequence
atgc intronic sequence ATGC exonic sequenceCTCGAGATTGCAAAGCTGGAGACTGGAAGAATAAGTGTTATCGGTGTGGAGAAAGAGGTCATATTGAAAGAAACTGCCAGAACAGTCCCAGGAAGCTCAGgtattctcatatggtgattacatgccaaaacatttctctcctgctgccttgacatttttttccatattatatttttgttaagcatgatactgttactgtgcaaagtttttgttagcttaaaactattatgttatattgcag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0040g02860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os03g17710.1 (Oryza sativa), 5'ss of exon 5
CTCGAGATTGCAAAGCTGGAGACTGGAAGAATAAGTGTTATCGGTGTGGAGAAAGAGGTCATATTGAAAGAAACTGCCAGAACAGTCCCAGGAAGCTCAGgtattctcatatggtgattacatgccaaaacatttctctcctgctgccttgacatttttttccatattatatttttgttaagcatgatactgttactgtgcaaagtttttgttagcttaaaactattatgttatattgcag
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CAAGAGACTGCAAGGCTGGTGACTGGAAGAACAAATGTTACCGTTGTGGAGAAAGAGGTCACATAGAAAGAAACTGCCAAAACAGTCCAAGAAATCTCAGgtattg----attgataccgttggtcaga-------tacactgtagcactc---tgttctaaggtactatgtttgaattactcaagacttctccaatacgtacttggttttccag--------------------------
upper sequence: Vv08s0040g02860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os05g02880.1 (Oryza sativa), 5'ss of exon 5
CTCGAGATTGCAAAGCTGGAGACTGGAAGAATAAGTGTTATCGGTGTGGAGAAAGAGGTCATATTGAAAGAAACTGCCAGAACAGTCCCAGGAAGCTCAGgtatt--ctcatatggtgattacatgccaaaacatttctctcctgctgccttgacatttttttccatattatatttttgttaagcatgatactgttactgtgcaaagtttttgttagcttaaaactattatgttatattgcag
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CAAGAGACTGCAAGGCTGGTGACTGGAAGAACAAATGTTACCGCTGTGGGGAGAGAGGTCACATAGAAAGAAACTGTCAAAACAGCCCAAGAAATCTCAGgtattgattgataagttgatctgataa-agagcagcact-tgcaattgttccgaggtactgtatttga--ataatttaacttag------atttctccaatgcatacttctttttttttcag---------------------
upper sequence: Vv08s0040g02860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G099317_T02 (Zea mays), 5'ss of exon 5
CTCGAGATTGCAAAGCTGGAGACTGGAAGAATAAGTGTTATCGGTGTGGAGAAAGAGGTCATATTGAAAGAAACTGCCAGAACAGTCCCAGGAAGCTCAGgtattctcatatggtgattacatgccaaaacatttctctcctgctgccttgacatttttttccatattatatttttgttaagcatgatactgttac-tgtgcaaagtttttgttagcttaaaactattatgttatattgcag
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CAAGAGACTGTAAGGCTGGTGACTGGAAAAATAAATGCTACCGTTGTGGAGAAAGAGGGCATATAGAAAGAAATTGCCAGAACAGTCCTAGGAGCGTCAGgtgct----tgtaatgatagtattc--------ttgtcctccagaaccgtagcctatcttctagcgttat----tacttgaaaatggtcttgatggatatgtata-tttcag------------------------------
upper sequence: Vv08s0040g02860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G175419_T01 (Zea mays), 5'ss of exon 5
CTCGAGATTGCAAAGCTGGAGACTGGAAGAATAAGTGTTATCGGTGTGGAGAAAGAGGTCATATTGAAAGAAACTGCCAGAACAGTCCCAGGAAGCTCAGgtattctcatatggtgattacatgccaaaacatttctctcctgctgccttgacatttttttccatattatatttttgttaagcatgatactgttactgtgcaaagtttttgttagcttaaaactattatgttatattgcag
| |||| || | ||||| ||||||||||| || || || || ||||| ||||| || ||||| |||||||| |||||||||||||| ||||| ||||||| || ||| || | || | ||||| | | || ||||| || || ||| | ||| | ||| | || | | |||| ||| | ||| || | |||
CAAGAGACTGTCAGGCTGGTGACTGGAAGAACAAATGCTACCGTTGTGGCGAAAGGGGCCATATAGAAAGAAATTGCCAGAACAGTCCAAGGAACCTCAGgtgtt----tattgttaacactatcagctacattccacagctata----tgacacacttaagcactatattctagtgtatatcattgaa-tgctttcat-taaagaagttgcttgctaaatatgtttag------------
upper sequence: Vv08s0040g02860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G099186_T03 (Zea mays), 5'ss of exon 6
CTCGAGATTGCAAAGCTGGAGACTGGAAGAATAAGTGTTATCGGTGTGGAGAAAGAGGTCATATTGAAAGAAACTGCCAGAACAGTCCCAGGAAGCTCAGgtattctcatatggtgattacatgccaaaacatttctctcctgctgccttgacatttttttccatattatatttttgttaagcatgatactgttactgtgcaaagtttttgttagcttaaaactattatgttatattgcag
| | || ||||| ||||| ||||||||||| || || || || ||||| ||| || ||||| || ||||| |||||||||||||| ||||| ||||||| || || | | || ||||| || |||| | | || || | ||| ||| | | | | | || ||||| ||| |||| | | | || | |||
CAAGGGACTGCAAGGCTGGTGACTGGAAGAACAAATGCTACCGCTGTGGTGAATCGGGCCATATAGAGAGAAATTGCCAGAACAGTCCAAGGAATCTCAGgtgtttattgata-taaccctatttagctacatt---ctgctgccatat-ggcacttaatcacattttagctcatcactga-----aagcttttactaagca-----tttgattgataaatatgtttag------------
upper sequence: Vv08s0040g02860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G35990.1 (Glycine max), 5'ss of exon 5
CTCGAGATTGCAAAGCTGGAGACTGGAAGAATAAGTGTTATCGGTGTGGAGAAAGAGGTCATATTGAAAGAAACTGCCAGAACAGTCCCAGGAAGCTCAGgtattctcatatggtgattaca---tgccaaaacatttctctcctgctgccttgacatttttttccatattatatttttgttaagcatgatactgttactgtgcaaagtttttgttagcttaaaactattatgttatattgcag
| ||||||||||||||||| || |||||||| |||||||| || ||||| |||||||||||||| |||| ||||| |||||||||||| ||| ||||| | ||| | || || | | ||| | | |||| || || || | |||| ||| | ||| | | | || | | ||| ||| || ||| |
CCCGAGATTGCAAAGCTGGGGATTGGAAGAACAAGTGTTACCGTTGTGGGGAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTCGAGgtaggccatgatgtagtttccaaacttctgctacagtgttgatttgctcttaagatggttattgatctcttatggattttatgagctttaaatcattgattt-caatgttga-attgttctaacag------------------
upper sequence: Vv08s0040g02860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G35980.3 (Glycine max), 5'ss of exon 5
CTCGAGATTGCAAAGCTGGAGACTGGAAGAATAAGTGTTATCGGTGTGGAGAAAGAGGTCATATTGAAAGAAACTGCCAGAACAGTCCCAGGAAGCTCAGgtattctcatatggtgattacatgccaaaacatttc---tctcctgctgccttgacat--ttttttccatattatatttttgttaagcatgatactgttactgtgcaaagtttttgttagcttaaaactattatgttatattgcag
| || |||||||||||||| || ||||||||||||||||| || ||||| || ||||| ||||| ||||| |||||| ||||||| |||| || | |||||| | || | || | |||| | | | | || || ||| |||| || |||| | || | | || | |||| || || || | ||| | || ||
CACGGGATTGCAAAGCTGGGGATTGGAAGAATAAGTGTTACCGCTGTGGGGAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgtt---gtgctatatagtttccaaggtgctgctgcttttgtgttgtcttaacatggttatttcatttgaatggggtctctgagatctaaactg--acgatgttaa---tctgtctggttcaag-------------------
upper sequence: Vv08s0040g02860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G33260.1 (Glycine max), 5'ss of exon 5
CTCGAGATTGCAAAGCTGGAGACTGGAAGAATAAGTGTTATCGGTGTGGAGAAAGAGGTCATATTGAAAGAAACTGCCAGAACAGTCCCAGGAAGCTCAGgtattctcatatggtgattacatgccaaa---acatttctctcctgctgccttgacat-ttttttccatatta-tatttttgttaagcatgatactgttactgtgcaaagtttttgttagcttaaaactattatgttatattgcag
| || |||||||||||||| || ||||||||||||||||| || ||||| || ||||| ||||| ||||| |||||| ||||||| |||| || | |||||| | || | ||| | |||| | | || || | ||| || | ||||||||| | | | | | ||| | |||| || ||| || | ||| | || ||
CACGGGATTGCAAAGCTGGGGATTGGAAGAATAAGTGTTACCGCTGTGGGGAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgca---gtgctatttagtttccaaggtggtactgcttctgtgttttcttaacctgctttttccatttcaatggagtctctgagctctaaactg--acgatgctaa---tctgtctgattcaag-------------------
upper sequence: Vv08s0040g02860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G35980.5 (Glycine max), 5'ss of exon 5
CTCGAGATTGCAAAGCTGGAGACTGGAAGAATAAGTGTTATCGGTGTGGAGAAAGAGGTCATATTGAAAGAAACTGCCAGAACAGTCCCAGGAAGCTCAGgtattctcatatggtgattacatgccaaaacatttc---tctcctgctgccttgacat--ttttttccatattatatttttgttaagcatgatactgttactgtgcaaagtttttgttagcttaaaactattatgttatattgcag
| || |||||||||||||| || ||||||||||||||||| || ||||| || ||||| ||||| ||||| |||||| ||||||| |||| || | |||||| | || | || | |||| | | | | || || ||| |||| || |||| | || | | || | |||| || || || | ||| | || || | | |
CACGGGATTGCAAAGCTGGGGATTGGAAGAATAAGTGTTACCGCTGTGGGGAGAGAGGACATATAGAAAGGAACTGCAAGAACAGCCCCAAAAAATTGAGgtatgtt---gtgctatatagtttccaaggtgctgctgcttttgtgttgtcttaacatggttatttcatttgaatggggtctctgagatctaaactg--acgatgttaa---tctgtctggttcaagc-accag------------
upper sequence: Vv08s0040g02860.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G33270.3 (Glycine max), 5'ss of exon 4
CTCGAGATTGCAAAGCTGGAGACTGGAAGAATAAGTGTTATCGGTGTGGAGAAAGAGGTCATATTGAAAGAAACTGCCAGAACAGTCCCAGGAAGCTCAGgtattctcatatggtgattacatgccaaaacatttctctcctgctgccttgacatttttttccatattatatttttgttaagcatgatactgttactgtgcaaagtttttgttagcttaaaactattatgttatattgcag
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CCCGAGATTGCAAAGCCGGGGATTGGAAGAACAAGTGTTACCGTTGTGGGGAAAGAGGTCATATAGAAAAGAACTGTAAGAACAGTCCCAAAAAGTTGAGgtaggcc------ataatctaatttccaaacttctacctcgtgttgatttgctcttaacatggttattgc-tctctaatgggttttatga----gctttaaatcattgatgtcaatttgaa-ttgttctaacag-------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71855393|gb|DT004448.1|DT004448EST: GAAAGAGGTCATATTGAAAGAAACTGCCAGAACAGTCCCAGGAAGCTCAG TCGACATGGACGGAGTTACTCACGATCTCCAGTTAGATCTCGCCATGGCAG
genomic: GAAAGAGGTCATATTGAAAGAAACTGCCAGAACAGTCCCAGGAAGCTCAGgtattctcat ... tatattgcagCCGACATGGACGGAGTTACTCACGATCTCCAGTTAGATCTCGCCATGGCAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CTCGAGATTGCAAAGCTGGAGACTGGAAGAATAAGTGTTATCGGTGTGGAGAAAGAGGTCATATTGAAAGAAACTGCCAGAACAGTCCCAGGAAGCTCAGgtattctcatatggtgattacatgccaaaacatttctctcctgctgccttgacatttttttccatattatatttttgttaagcatgatactgttactgtgcaaagtttttgttagcttaaaactattatgttatattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA