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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATGGAAGGTTGAACAAGTGTGGTGTCATTAGTCCTCGTTTTGATGTTGGTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatgaacttggcaaactgcaaggggccaatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcag

Basic information

species Vitis vinifera
transcript Vv08s0040g02460.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g02460.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA15G10950.1 (Glycine max), 5'ss of exon 3
GAATGGAAGGTTGAACAAGTGTGGTGTCATTAGTCCTCGTTTTGATGTTGGTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatgaacttggcaaactgcaaggggccaatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcag
|||||| ||  ||||||| ||||| || |||||||| ||||||||||||||||||||||| |||||    |||||||||||  |||||||||||||||||||  |  | ||||| ||  | || ||||| | |||    | | |      ||     ||  ||||      |  |   |  ||   | |  | |||||  |    |  |||                          
GAATGGTAGACTGAACAAATGTGGGGTTATTAGTCCGCGTTTTGATGTTGGTGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTGCTCCCCTCAAGACAGgtcag--ttcaaaagcc--ttttctttttgtcaaatttcagagatcttctttcct--tgtccttg-----ttatagaagagcataaactcgtttttgaaaagacatatttg--------------------------

upper sequence: Vv08s0040g02460.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA17G02200.1 (Glycine max), 5'ss of exon 3
GAATGGAAGGTTGAACAAGTGTGGTGTCATTAGTCCTCGTTTTGATGTTGGTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatgaacttggcaaactgcaaggggccaatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcag
||| || ||  ||||||||||||| || |||||||| ||||||||||| || |||||||| |||||    |||||||||||  | |||||||||||||||||  |  |  ||   |   |       || |     | |      || |  |        |    |||   | | | |  |   | |  || |  |||| ||||  |                              
GAACGGTAGACTGAACAAGTGTGGGGTTATTAGTCCCCGTTTTGATGTGGGCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtaag--ttaaactgcttttcccccccttttcctttatacccttttgttgctgtgttcagat---gcatgtttctatgaactt-taaacatcccatgag-atgaggt------------------------------

upper sequence: Vv08s0040g02460.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA07G38520.1 (Glycine max), 5'ss of exon 3
GAATGGAAGGTTGAACAAGTGTGGTGTCATTAGTCCTCGTTTTGATGTTGGTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggc---atccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatgaacttggcaaactgcaaggggccaatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcag
||| || ||  ||||||||||||| || |||||||| ||||||||||| || |||||||| |||||    |||||||||||  | |||||||||||||||||  |    |   |       |      |||| |           |||||    |    ||||||||   | ||  || | ||  |    |||   ||                                          
GAACGGTAGACTGAACAAGTGTGGGGTTATTAGTCCCCGTTTTGATGTCGGCGTCAAAGAGATTGAAGGTTGGACTGCTAGGCTTCTCCCCTCAAGACAGgtcagttaaagttatttttttcatacccttttgtgtgctgtgttcaaatgcatgtttctatgaactttatacacaccatgaggtgaggtcttacatttgt----------------------------------------

upper sequence: Vv08s0040g02460.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G00600.2 (Glycine max), 5'ss of exon 3
GAATGGAAGGTTGAACAAGTGTGGTGTCATTAGTCCTCGTTTTGATGTTGGTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatga--acttggcaaactgcaaggggccaatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcag
||||||  || |||| |||||||| || ||||| ||||| |||||||||||||||||||| |||||    |||||||| ||| | || ||||||||||||||   | |  |||||| |  |   |  | |   | |         |  ||||  | ||    || |    || |    |      |  |  |  | | ||||||                                   
GAATGGGCGGCTGAATAAGTGTGGGGTTATTAGCCCTCGCTTTGATGTTGGTGTCAAAGAGATTGAAGGTTGGACTGCAAGACTACTACCCTCAAGACAGgtaacctt--aaaaccta--accctgatcagtcacacctttgcctttgtcttccatatagttacctctttaattctttgcaatacactacaaagcat-gagtatt----------------------------------

upper sequence: Vv08s0040g02460.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA11G00590.1 (Glycine max), 5'ss of exon 2
GAATGGAAGGTTGAACAAGTGTGGTGTCATTAGTCCTCGTTTTGATGTTGGTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatga--acttggcaaactgcaaggggccaatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcag
||||||  || |||| |||||||| || ||||| ||||| |||||||||||||||||||| |||||    |||||||| ||| | || ||||||||||||||   | |  |||||| |  |   |  | |   | |         |  ||||  | ||    || |    || |    |      || |  |  | | ||||||                                   
GAATGGGCGGCTGAATAAGTGTGGGGTTATTAGCCCTCGCTTTGATGTTGGTGTCAAAGAGATTGAAGGTTGGACTGCAAGACTACTACCCTCAAGACAGgtaacctt--aaaaccta--accctgatcaatcacacctttgcctttgtcttccatatagttacctctttaattctttgcaatacattacaaagcat-gagtatt----------------------------------

upper sequence: Vv08s0040g02460.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA01G45060.1 (Glycine max), 5'ss of exon 3
GAATGGAAGGTTGAACAAGTGTGGTGTCATTAGTCCTCGTTTTGATGTTGGTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatgaacttg-gcaaactgcaaggggccaatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcag
|||||| ||| |||| |||||||| || || || ||||| |||||||| ||||||||||| |||||    |||||||| ||| |||| ||||||||||||||   |||| ||| || ||    | ||  || | |       | ||| | |||||  |    |||    |||||         |||  |   | |||| |  ||   |                              
GAATGGCAGGCTGAATAAGTGTGGGGTTATAAGCCCTCGCTTTGATGTCGGTGTCAAAGAGATTGAAGGTTGGACTGCAAGACTGCTTCCCTCAAGACAGgt-aacatcaaaacccaacc--ctgttcaatcacacctttgcatatgctattaaactttgtgttgtatgaactgtctt---ttaatggta--tgtttgggagtggact------------------------------

upper sequence: Vv08s0040g02460.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT2G39590.1 (Arabidopsis thaliana), 5'ss of exon 2
GAATGGAAGGTTGAACAAGTGTGGTGTCATTAGTCCTCGTTTTGATGTTGGTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatgaacttggcaaactgcaaggggccaatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcag
 ||||||||| | ||||| || ||||| ||||||||||| | |||  |||| ||||| || |||||    |||||||||| ||||||||| |||||||||||    | | ||   ||| | |||| ||||  |||      | |   || | |    | |   ||    |       |||  | ||     |     |||||| | |       |||  |                 
TAATGGAAGGCTTAACAACTGCGGTGTTATTAGTCCTCGATATGACCTTGGCGTCAAGGAAATTGAAGGTTGGACTGCTAAATTGCTCCCTTCAAGACAGgtaaaaaactaa---ccattcttttatttaataaatctctgagaccaat-tcatggtttattgtgtttgatcattgtgggatattc-----taacaaagtatg-tgtaccaaattgagcag----------------

upper sequence: Vv08s0040g02460.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S426_18V6.1 (Physcomitrella patens), 5'ss of exon 2
GAATGGAAGGTTGAACAAGTGTGGTGTCATTAGTCCTCGTTTTGATGTTGGTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatccaaaacccactattttttttataaaaaaaaaaaaaatgatcttaaaaatgaacttggcaaactgcaaggggccaatcattattctttgagtatgatttcttggggtgactaatgagtgctatttgcag
 |||||||| ||||||||||| |||||||| ||||||||||   | ||||| ||    ||  | ||  | ||||||||  |  | || || ||  | |||||| |  |     |  ||  |||||  | ||  ||     |      || ||| |||     | ||  | || |||    |   |    || ||      ||  | |  ||                          
CAATGGAAGATTGAACAAGTGCGGTGTCATCAGTCCTCGTTACAACGTTGGAGTTGGTGAGCTCGAAGCTTGGACTGCCCGGCTCCTACCATCTCGTCAGgtttgtgtttgtcaagca--attttgatcattgaatgcgca------attttacaaagattttaggtcaccttcaaattacagtttcacatgct---gaaatattctgctg--------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110706292|gb|EE081689.1|EE081689
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|71870593|gb|DT019648.1|DT019648
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|30297968|gb|CB974762.1|CB974762
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|26262523|gb|CA813586.1|CA813586
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCCCAAGACAG                         TTTGGATATATTGTCT-GACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110695174|gb|EE072887.1|EE072887
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110723278|gb|EE100404.1|EE100404
EST:     GTGTCAAAGATATTGAGCACTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110421139|gb|EC987428.1|EC987428
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110427515|gb|EC993958.1|EC993958
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAATAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|71866878|gb|DT015933.1|DT015933
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|28966564|gb|CB345597.1|CB345597
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110696628|gb|EE072909.1|EE072909
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110385929|gb|EC950489.1|EC950489
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|55778140|gb|AJ862926.1|AJ862926
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110365476|gb|EC928529.1|EC928529
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110692301|gb|EE071387.1|EE071387
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110731018|gb|EE108758.1|EE108758
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110707241|gb|EE083471.1|EE083471
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110420349|gb|EC986621.1|EC986621
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110405496|gb|EC971037.1|EC971037
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|30298030|gb|CB974824.1|CB974824
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGCCAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
EST: gi|110707255|gb|EE083506.1|EE083506
EST:     GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAG                         TTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA
genomic: GTGTCAAAGATATTGAGCCCTGGACTGCTAGATTGCTCCCCTCAAGACAGgttggcatcc ... ctatttgcagTTTGGATATATTGTCTTGACAACTTCTGCTGGCATCATGGATCATGAAGAA