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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGACTGGTTGAACAAGTTTATTTTTGATATGTGGCCTTATCTTGATAAGgtgaaagatatccagaaatgtatttatttttcttagatcattctgtggaatatgacttaaatgatattgccaatttactctcggttcttctgcag

Basic information

species Vitis vinifera
transcript Vv08s0040g01740.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g01740.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os06g47130.1 (Oryza sativa), 5'ss of exon 3
GCTGACTGGTTGAACAAGTTTATTTTTGATATGTGGCCTTATCTTGATAAGgtgaaagatatccagaaatgtatttatttttcttagatcattctgtggaatatgac------ttaaatgatattgccaatttactctcggttcttctgcag------------------------------------------------------
| ||||||| | |||||||||||||||||||||||||| |  |||||||||||       |  |  | |||   |  ||  |   |  |  |  |||   ||           | |  |||   |    | ||  |||||   | |   |||                                                      
GTTGACTGGATTAACAAGTTTATTTTTGATATGTGGCCCTTCCTTGATAAGgtattttcaagtcttatatggcctgtttgctaccaagttttagtgtaatattcagtgcttcatcatctgagcgttgagagttcttctcgaaccattgtcagcttgggtaattcaattgattcatttttttaagactcaattgactcattgatcag

upper sequence: Vv08s0040g01740.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os06g47130.2 (Oryza sativa), 5'ss of exon 3
GCTGACTGGTTGAACAAGTTTATTTTTGATATGTGGCCTTATCTTGATAAGgtgaaagatatccagaaatgtatttatttttcttagatcattctgtggaatatgac------ttaaatgatattgccaatttactctcggttcttctgcag
| ||||||| | |||||||||||||||||||||||||| |  |||||||||||       |  |  | |||   |  ||  |   |  |  |  |||   ||           | |  |||   |    | ||  |||||   | |   || 
GTTGACTGGATTAACAAGTTTATTTTTGATATGTGGCCCTTCCTTGATAAGgtattttcaagtcttatatggcctgtttgctaccaagttttagtgtaatattcagtgcttcatcatctgagcgttgagagttcttctcgaaccattgtca-

upper sequence: Vv08s0040g01740.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G140443_T02 (Zea mays), 5'ss of exon 3
GCTGACTGGTTGAACAAGTTTATTTTTGATATGTGGCCTTATCTTGATAAGgtg-------------aaagatatccag---aaatgta-tttatttttcttagat---cattc---tgtggaatatgacttaaatga---tattgccaatttactctcggttcttctgcag-----------
  ||||||| ||||||||||||||||||| |||||||||| ||| ||||||||              |    |||   |   |||| || |||  |||||   | |   ||||    ||| | |||    ||||| |     ||    |    |      ||||||||||             
ATTGACTGGATGAACAAGTTTATTTTTGACATGTGGCCTTTTCTGGATAAGgttctttcaactttttattcttatttggtacaaatttagtttgattttcacgggtacacatttatgtgttgtataaattttaaacgggagcataattagccaaaataatgttcttctgctccacgaacacag