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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCGAGAAAGGGAGGAGTCTGTCACTGTTTTATTATGCGGCACAAGTGGGTGTGGCAAATCTACTTTGTCCACATTGCTGgtacttacttcaccaccatagattttctttccataattgaagtttgttggttttcctcattatccttgcccttggcttatcatctttgttttattgagaa...

Basic information

species Vitis vinifera
transcript Vv08s0040g01610.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g01610.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT5G60760.1 (Arabidopsis thaliana), 5'ss of exon 4
GATCCGAGAAAGGGAGGAGTCTGTCACTGTTTTATTATGCGGCACAAGTGGGTGTGGCAAATCTACTTTGTCCACATTGCTGgtacttact-tcac---caccatagattttct----ttccataat-tgaag-tttgttggttttcctcattatccttgcc-cttggct---tatcatct---ttgttttattgagaa---------------------------------
 |||||||||||| | || ||||| |||||| || | ||||| || ||||| ||||||||||||||  | ||| || | |||||| ||    ||||    |  |||    || |    |  |||||  ||| | ||   || |||   |  ||||  |      |||| |   ||   | |   || |||| |  | |                                  
AATCCGAGAAAGGAAAGAATCTGTGACTGTTCTACTGTGCGGTACTAGTGGCTGTGGCAAATCTACACTCTCCGCACTTCTGgtatttttcatcacatgtattataatcgttttagattgacataagatgatgcttcactgttttgttttgttatattcaatatttggttaggtactgtttcacttcttttttccacaggctttacaatactggattctgttttccttacag

upper sequence: Vv08s0040g01610.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S7_501V6.1 (Physcomitrella patens), 5'ss of exon 3
GATCCGAGAAAGGGAGGAGTCTGTCACTGTTTTATTATGCGGCACAAGTGGGTGTGGCAAATCTACTTTGTCCACATTGCTGgtacttacttcaccaccat---agattttctttccataat-tgaagtttgttggttttcctcat-tatccttgcccttggcttatcatctttgttttattgagaa------------------------------------------------------------------------------------------
 || || || | |      |||||||||||| |||| || || ||||||||||||||||| || || ||| | ||| ||||||||| | ||   ||    |   ||    |   || | | | ||  |  ||||| | | | |  | | |   |     |  | ||| |   | |   ||  || |                                                                                           
TATTCGTGAGAAGAGATCTTCTGTCACTGTTCTATTGTGTGGAACAAGTGGGTGTGGCAAGTCGACATTGGCGACACTGCTGgtacgttctctccctgtgtttcagtgagttgctctacagtgtgttgcgtgttgctgtacttggtatgtagctagatatt-catatgacgatggcaataaggatagtgacccatatacctctcatagcacgatttgtcaaagtaacggtgatttcagaccctaatcgactacccctaaatcttgtgagaattgcag