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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTTTACTACGCTGGTCTTAAATTCACATCACCCACTTTCTCCTGTGCCATGAGCAACATGCTCCCAGCTATGACATTTGTCATGGCGGTTCTTTGCAGgtatgggtctacattaatctctcgctctccctctctcttgtgttttgaactagctagcacggtgatgtaacatggggtgatgaatatatatag

Basic information

species Vitis vinifera
transcript Vv08s0040g00800.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g00800.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G136567_T02 (Zea mays), 5'ss of exon 2
ACTTTTACTACGCTGGTCTTAAATTCACATCACCCACTTTCTCCTGTGCCATGAGCAACATGCTCCCAGCTATGACATTTGTCATGGCGGTTCTTTGCAGgtatgggtctacattaatctctcgctctccctctctcttgtgttttgaactagctagcacggtgatgtaaca----tggggtgatgaatatatatag------------------------------------------------------------------------------------
|||| |||||||| || || || ||||| || || || |||||||| |||||||||||||||||||| || ||||| || ||| |||| || || | |||||||   | || |     | |       | |     || | | |  |||| ||| || ||   ||   |  |         | |||||  ||||                                                                                       
ACTTCTACTACGCGGGGCTCAAGTTCACCTCGCCGACCTTCTCCTGCGCCATGAGCAACATGCTCCCCGCCATGACCTTCGTCCTGGCCGTGCTCTTCAGgtatatatatataca---cgcatatatactcatgagctagcgctg-gaacgagcaagaactaagaaacacaagcagcaaaataatgaaagtatagcaaataggcaacacgtacgtacagttgtggcattggtgtggtggataacaaacgaactgattgatataacggatacgtaccgtcag

upper sequence: Vv08s0040g00800.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G27760.2 (Glycine max), 5'ss of exon 3
ACTTTTACTACGCTGGTCTTAAATTCACATCACCCACTTTCTCCTGTGCCATGAGCAACATGCTCCCAGCTATGACATTTGTCATGGCGGTTCTTTGCAGgtatgggtctacat-taatctctcgctctccctctctcttgtgtt---ttgaactagctagcacggtgatgtaacatggggtga--tgaatatatatag---------------------------
|||| || || || ||  | ||||| || || || || | ||| ||||| || |||||||||||||| |||||||||||||| ||||| | | ||| ||||||    |  |    |||||  |   |||   |||   || | ||   |||       ||| ||  |  | |    ||   ||   |||    | || |                           
ACTTATATTATGCGGGGTTGAAATTTACTTCCCCTACCTACTCATGTGCGATAAGCAACATGCTCCCTGCTATGACATTTGTGATGGCTGCTATTTTCAGgtaaatttaaatgcataatcagttaatcttaatcttaattctattcatttgttactattagtactatttttttttttgtattgctttgagataacatggttttactctctgtttgggatggattag