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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGAAACTTAAAGAACCTAATCAGCTTGGATTTGTACAACAACAACATCTCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttcacatcatcagaaaatgttctcttactttattagtttgagccagacaatgtgaactttaggccttcttcttggatcagttttttatcttcat...

Basic information

species Vitis vinifera
transcript Vv08s0040g00520.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g00520.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GRMZM2G121820_T01 (Zea mays), 5'ss of exon 3
TTGGAAACTTAAAGAACCTAATCAGCTTGGATTTGTACAACAACAACATCTCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttcacatcatcagaaaatgttctcttactttattagtttgagccagacaatgtgaactttaggccttcttcttggatcagttttttatcttcat----
|||| || || ||||| ||||| ||||| || |||||||| |||||||| ||||||   || ||||| ||  | |||||||||||||| || || ||||||| ||||| |     |   ||| | |  |   |  |||| | |    | ||||   |    |  ||||    |     |||||  |  ||| ||  |  |    
TTGGCAATTTGAAGAATCTAATAAGCTTCGACTTGTACAAGAACAACATTTCGGGGACAATACCTCCTGCCCTTGGAAAGTTGAAGTCCCTTGTATTCTTgtaagtttaattctgt---aaattctgtttacatattataaataattgtcagattgt-cacatcttagcagctaaaagtggatttgaatttgatactagttttg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351028345|gb|FQ427241.1|FQ427241
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|351023659|gb|FQ448210.1|FQ448210
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|352781301|gb|FQ467382.1|FQ467382
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|45368246|gb|CK906605.1|CK906605
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|110386951|gb|EC951586.1|EC951586
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|110360649|gb|EC923923.1|EC923923
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|351019024|gb|FQ426523.1|FQ426523
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|110387277|gb|EC951932.1|EC951932
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|30135520|gb|CB920858.1|CB920858
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|33403630|gb|CF209257.1|CF209257
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|351055716|gb|FQ452181.1|FQ452181
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|110370437|gb|EC929699.1|EC929699
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|28965488|gb|CB344521.1|CB344521
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAGTTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|29781975|gb|CB346866.2|CB346866
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|22013488|gb|BQ798522.1|BQ798522
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|110428332|gb|EC994801.1|EC994801
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|33404930|gb|CF210557.1|CF210557
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGATAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|352769326|gb|FQ471475.1|FQ471475
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|30136774|gb|CB922112.1|CB922112
EST:     GTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: GTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|29784167|gb|CB344579.2|CB344579
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAGTTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|254917926|gb|GR903578.1|GR903578
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|351052434|gb|FQ452467.1|FQ452467
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|110383625|gb|EC948008.1|EC948008
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|161713713|gb|FC063744.1|FC063744
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAAC
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAAC
EST: gi|110728240|gb|EE103634.1|EE103634
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|110721573|gb|EE098723.1|EE098723
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|45771554|gb|CN007406.1|CN007406
EST:     TCGGGGG-TATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|110726662|gb|EE102641.1|EE102641
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|161719503|gb|FC066427.1|FC066427
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|30137913|gb|CB923251.1|CB923251
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|294966556|gb|GW837691.1|GW837691
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTA
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTA
EST: gi|110727502|gb|EE104333.1|EE104333
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|30126168|gb|CB911507.1|CB911507
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|161716902|gb|FC068124.1|FC068124
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|351043498|gb|FQ428970.1|FQ428970
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAGTGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|110427331|gb|EC993766.1|EC993766
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|71880620|gb|DT029675.1|DT029675
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|71879674|gb|DT028729.1|DT028729
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|28967589|gb|CB346622.1|CB346622
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|71879299|gb|DT028354.1|DT028354
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|110715696|gb|EE094041.1|EE094041
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
EST: gi|110372251|gb|EC936404.1|EC936404
EST:     TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTT                         ACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG
genomic: TCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttca ... aatttgatagACGACTTAATGATAATCAATTAACTGGGCCAATCCCAAGGGAGCTTGTTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGGAAACTTAAAGAACCTAATCAGCTTGGATTTGTACAACAACAACATCTCGGGGGTTATTCCTCCGGCATTGGGAAAGTTGAAGTCTCTGGTGTTCTTgtgagtttcacatcatcagaaaatgttctcttactttattagtttgagccagacaatgtgaactttaggccttcttcttggatcagttttttatcttcat

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttcttc