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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaactttttatgcttgctcataatttttattcgagttcagtgtttcttttctctttgttagtatttgttggtggagaatttttcaatatttaaatttgg...

Basic information

species Vitis vinifera
transcript Vv08s0040g00410.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g00410.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G17920.1 (Glycine max), 5'ss of exon 3
GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaactttttatgcttgctcataatttttattcgagttcagtgtttcttttctctttgttagtatttgttggtggagaatttttcaatatttaaatttgg---
|| || |||||||||||  |||| || |||||| | |||||||||||||||||||| || || || ||||| || ||||| ||||||  ||   ||  |  | | | || ||  || || ||  ||   | |          || | ||      |  | |  |||      ||||           
GGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgtacgttgccat--taaccccttatcttgttttgatttt-gtaaatatccgaaagagatttgcataaaagagacgtggttttactggcatttgttaacaagct

upper sequence: Vv08s0040g00410.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA05G14330.1 (Glycine max), 5'ss of exon 3
GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaactttttatgcttgctcataatttttattcgagttcagtgtttcttttctctttgttagtatttgttggtggagaatttttcaatatttaaatttgg--
|| || |||||||||||  |||| || |||||| | |||||||||||||||||||| || || || ||||| || ||||| ||||||   ||| | | |  | | | ||  |  || |  ||   | || | | |   |   ||  |   | || ||   || ||| |  |||    ||   |   
GGCGTTGAGAAGCTTATTCCGTCGAAAATGATGCTTCCGGGTTCCAATAGAAGAATACACTCCGTTCATCGTCACTCTGGGATGgta--ctttgacgttaaccccttatcgtattttgttttattttttacatgttggtgctttttttgctctttgttttgattttgtatatacccgaaagggatt

upper sequence: Vv08s0040g00410.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT2G27020.1 (Arabidopsis thaliana), 5'ss of exon 3
GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgta--actttttatgcttgctca--------taatttttattcgagttcagtgtttcttttctctttgttagtatttgttggtggagaatttttcaatatttaaatttgg-------------------------------------
||||| ||||| ||||| || || ||||||||| | || |||||||| || ||||| |||||||| ||||| ||| |||||||||||    ||||| | ||     |        || ||| |  |   | |  || | | |    | |||  ||     | ||| ||   | | |   | ||| |   ||||                                      
GGAGTTGAGAAACTTATTGCATCAAAGATGATGCTACCAGGTTCCAACAGGAGAATCCATTCTGTTCATCGTCATGCTGGCATGgtatgtttttttctcctaaactataggaaattagtttctgctgaggatatgtatctttcaagttttttgtaactactattg-tgtctagtctcgtagtatattgttttgtttcatgattatgggtatttctacttctgtcatgtcag

upper sequence: Vv08s0040g00410.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: PP1S72_57V6.2 (Physcomitrella patens), 5'ss of exon 5
GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaactttttatgcttgctcataatttttattcg-agttcagtgtttcttttctctttgttagtatttgtt-ggtggagaatttttcaatatt-taaatttgg-
|||||||||||||||||  | ||||| ||| |||||  ||| |||||||| ||||||||| ||||| |||| ||| |||||||||||| ||     | |   | | |||  | ||| | |  |  ||  |  ||   ||  | |    | | |||  ||    | || |     |   ||  |   | 
GGAGTAGAGAAGCTTATTTCCTCCAAAATGTTGTTGGAGGGCTCCAATAGGAGAATTCATGCTGTGGATCGACATGCTGGCATGgtaagttc----gttaagttacaatactcatttgcaaataggtagtctttaattcaatatctacactcgttcagtcccaagttatgtgccaagatagctcctgc

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34545358|gb|CF513590.1|CF513590
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|87584053|gb|DY473356.1|DY473356
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTATCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|110712939|gb|EE088423.1|EE088423
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|351026032|gb|FQ428044.1|FQ428044
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|26267610|gb|CA818673.1|CA818673
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|351016637|gb|FQ424064.1|FQ424064
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|110689940|gb|EE066605.1|EE066605
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|161710249|gb|FC058959.1|FC058959
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGATGCATATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|110405352|gb|EC970893.1|EC970893
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|110719773|gb|EE095192.1|EE095192
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|37185131|gb|CF604484.1|CF604484
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|110720841|gb|EE097126.1|EE097126
EST:     TGCCGGGTTCCAATAGAAGAATCCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|34545280|gb|CF513512.1|CF513512
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|161715533|gb|FC069462.1|FC069462
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|349829839|gb|FQ422152.1|FQ422152
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|351012831|gb|FQ430394.1|FQ430394
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|110428341|gb|EC994810.1|EC994810
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|110702145|gb|EE080525.1|EE080525
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|71880094|gb|DT029149.1|DT029149
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|351017561|gb|FQ435914.1|FQ435914
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|34543966|gb|CF512198.1|CF512198
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|71880613|gb|DT029668.1|DT029668
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|110720821|gb|EE097078.1|EE097078
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|110718292|gb|EE094957.1|EE094957
EST:     TGCCGGGTTCCAATAGAAGAATCCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|351033938|gb|FQ462993.1|FQ462993
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|110727594|gb|EE104529.1|EE104529
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|294963862|gb|GW836737.1|GW836737
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|110707900|gb|EE084829.1|EE084829
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|351023141|gb|FQ432524.1|FQ432524
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|349823527|gb|FQ414937.1|FQ414937
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|71879184|gb|DT028239.1|DT028239
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|161719434|gb|FC067375.1|FC067375
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|351029065|gb|FQ435265.1|FQ435265
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|161712773|gb|FC061997.1|FC061997
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCATATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|110428899|gb|EC995383.1|EC995383
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|37184434|gb|CF603788.1|CF603788
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|110713723|gb|EE089893.1|EE089893
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|110686023|gb|EE063265.1|EE063265
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|30253109|gb|CB970660.1|CB970660
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
EST: gi|351021754|gb|FQ437139.1|FQ437139
EST:     TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATG                         GCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG
genomic: TGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaacttttt ... ccaattacagGCTGTAGCCGGACTAGCTGCAGATGGGAGGCAAATTGTTGCACGAGCCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGAGTAGAGAAGCTTATAGCGTCCAAGATGATGTTGCCGGGTTCCAATAGAAGAATTCATTCTGTGCATCGCCATTCTGGCATGgtaactttttatgcttgctcataatttttattcgagttcagtgtttcttttctctttgttagtatttgttggtggagaatttttcaatatttaaatttgg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtggag