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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTATCGTCCTCCTCGTGTTTCTCACTGCTCAATCTGCAACAACTGTGTTCAGAGATTTGATCATCACTGTCCATGGGTTGGTCAATGCATTGGAATAgtaagtttttttttttttttttttgtacgtcttaatcttatatgtgtgtgtatgtgcatgtacttgtatccacctagtacccaaatctagtatatctgat...

Basic information

species Vitis vinifera
transcript Vv08s0040g00380.t01
intron # 3
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv08s0040g00380.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os12g03730.1 (Oryza sativa), 5'ss of exon 3
GCTTTATCGTCCTCCTCGTGTTTCTCACTGCTCAATCTGCAACAACTGTGTTCAGAGATTTGATCATCACTGTCCATGGGTTGGTCAATGCATTGGAATAgtaagt------ttttttttttttttttttgtac-gtcttaatcttatatgtgtgtgtatgtgcat--gtacttgtatccacctagtacccaaatctagtatatctgat
    || || || || ||    || || ||||| |||||||||||||| ||  | |  |||||||| |||||||||||||| || |||||||||||| | ||||||      |   |  |    |  |  |||  ||| | | | ||  |   |||| |  | ||    || |||| ||||    ||    | |   | |||       
AAGGTACCGCCCACCACGATCCTCACATTGCTCCATCTGCAACAACTGCGTCGAAAAGTTTGATCACCACTGTCCATGGGTCGGCCAATGCATTGGACTTgtaagtaaacaatcaatgatgcagtaatcagtatagtcatcagcctaattcaatgtgcagttccagtactatttgtttccatagtgtttttaga---aatatg------

upper sequence: Vv08s0040g00380.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: LOC_Os11g03910.1 (Oryza sativa), 5'ss of exon 3
GCTTTATCGTCCTCCTCGTGTTTCTCACTGCTCAATCTGCAACAACTGTGTTCAGAGATTTGATCATCACTGTCCATGGGTTGGTCAATGCATTGGAATAgtaagt------ttttttttttttttttttgtac-gtc-ttaatcttatatgtg-tgtgtatgtgcatgtact-tgtatccacctagtacccaaatctagtatatctgat
    || || || || ||    || || ||||| |||||||||||||| ||| | |  |||||||| ||||| |||||||| || || ||||||||| | ||||||      |   |  |       |  |||  ||| | |  |||| ||    |||| |  | || ||||| | | |   | ||||       | |||   |||    
AAGGTACCGCCCACCGCGATCCTCACATTGCTCCATCTGCAACAACTGCGTTGAAAAGTTTGATCACCACTGCCCATGGGTCGGCCAGTGCATTGGACTTgtaagtaaacaatcaatgatgcagcaatcagtatagtcatcagccttaaattcaatgtgcagttcca-gtactatttgtttccatagtgtt----tttag-gcatc----

upper sequence: Vv08s0040g00380.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G30360.1 (Glycine max), 5'ss of exon 3
GCTTTATCGTCCTCCTCGTGTTTCTCACTGCTCAATCTGCAACAACTGTGTTCAGAGATTTGATCATCACTGTCCATGGGTTGGTCAATGCATTGGAATAgtaagtttttttttttttttttttgtacgtcttaatcttatatgtgtgtgtatgtgcatgtacttgtatccacctagtacccaaatctagtatatctgat-
||||||||| |||||||||  |||||| || || || |||||||| ||||| ||||||||||||||||||||||| |||||||| || ||||||||||||||||||    | |  | |        |  | |  |   | |   || |   ||||  |  |  || |||||| | | |       | |  |   |   |  
GCTTTATCGCCCTCCTCGTACTTCTCATTGTTCTATATGCAACAATTGTGTCCAGAGATTTGATCATCACTGTCCCTGGGTTGGCCAGTGCATTGGAATAgtaagtccagtatactgtaaaaagtgaaatttagaaactttcaatgagacaatgt-tacattgttttatccaacaacttttttcttatgcttcttggaaat

upper sequence: Vv08s0040g00380.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G27410.1 (Glycine max), 5'ss of exon 3
GCTTTATCGTCCTCCTCGTGTTTCTCACTGCTCAATCTGCAACAACTGTGTTCAGAGATTTGATCATCACTGTCCATGGGTTGGTCAATGCATTGGAATAgtaagtttttttttttttttttttgtacgtcttaatcttatatgtgtgtgtatgtgcatgtacttgtatccacctagtacccaaatctagtatatctgat-
|||||||||||||||||||  |||||| || || || ||| |||| ||||| ||||||||||||||||||||||| |||||||| || ||||||||||||||||||  | | |  | |        | || |  |   |     || |   ||||  |  | ||| |||||  | | |       | || |   |  ||  
GCTTTATCGTCCTCCTCGTACTTCTCATTGTTCTATATGCGACAATTGTGTCCAGAGATTTGATCATCACTGTCCCTGGGTTGGCCAGTGCATTGGAATAgtaagtcctctatactgtaacaagtgaagtttagaaacttccaatgagataatgt-tacatgcttttatccgacaatttttttcttatacttcttgggaat

upper sequence: Vv08s0040g00380.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G56930.1 (Arabidopsis thaliana), 5'ss of exon 3
GCTTTATCGTCCTCCTCGTGTTTCTCACTGCTCAATCTGCAACAACTGTGTTCAGAGATTTGATCATCACTGTCCATGGGTTGGTCAATGCATTGGAATAgtaagttt-ttttttttttttttttgtacgtcttaatcttatatgtgtgtgtatgtgcatgtacttgtatccacctagtacccaaatctagtatatctgat
|||||| ||||| ||| | | |||||| || || || |||||||||||||| |||||||||||||||||||| || |||||||| || ||||||||| | ||||||||  |   |   | ||    ||  |       |  ||||| | || |  ||  || | |  | | ||                            
GCTTTACCGTCCACCTAGAGCTTCTCATTGTTCCATATGCAACAACTGTGTCCAGAGATTTGATCATCACTGCCCTTGGGTTGGCCAGTGCATTGGAGTGgtaagtttactccatgactcttgccatatattcccggttc-tatgttt-tgaacttgtttggattcttttgcag---------------------------

upper sequence: Vv08s0040g00380.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: AT3G56930.2 (Arabidopsis thaliana), 5'ss of exon 3
GCTTTATCGTCCTCCTCGTGTTTCTCACTGCTCAATCTGCAACAACTGTGTTCAGAGATTTGATCATCACTGTCCATGGGTTGGTCAATGCATTGGAATAgtaagttttttttttttttttt-ttgtacgt-cttaatcttatatgtgtgtgtatgtgcatgtacttgtatccacctagtacccaaatctagtatat-ctgat-------------------------------------------------------------------------------
|||||| ||||| ||| | | |||||| || || || |||||||||||||| |||||||||||||||||||| || |||||||| || ||||||||| | ||||||||  |   |   | ||    ||  | |    |  ||| | | ||    |||     | ||| |  |  |  | |  ||   |||  |  ||  | ||                                                                               
GCTTTACCGTCCACCTAGAGCTTCTCATTGTTCCATATGCAACAACTGTGTCCAGAGATTTGATCATCACTGCCCTTGGGTTGGCCAGTGCATTGGAGTGgtaagtttactccatgactcttgccatatattcccggttctatgttt-tgaacttgtttggattcttttg-cagcgaaattaccggttcttcttcatgttcatatcaacatcaaccactctgtgcatatatgtgtttgccttttcttggttgaacatatttcaaagacatatggatgaaaag