Sequence
atgc intronic sequence ATGC exonic sequenceTGTAGCATACCTTAATGTAGACTGTGCAGTTCAAGGACCAGGCTTCTTTGCTGGTGCAACGCCTCAGCTAGATAATCTTCTCATTGAGGTTGCAAAGAAGgtagaaaaagatggcaaaataagttcacaagattgttaatgttcaatctatttggatctgaattgatgacaacacctggtatttcaaactgtgtctaaattgtgatttaaactgaattccag
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv08s0032g00670.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA10G11100.1 (Glycine max), 5'ss of exon 4
TGTAGCATACCTTAATGTAGACTGTGCAGTTCAAGGACCAGGCTTCTTTGCTGGTGCAACGCCTCAGCTAGATAATCTTCTCATTGAGGTTGCAAAGAAGgtagaaaaagatggcaaaataagttcacaagattgttaatgttcaatctatttggatctgaattgatgacaacacctggtatttcaaactgtgtctaaattgtgatttaaactgaattccag
|||||||||||| |||||||||||||| |||||||| || || ||||||||||| |||| |||||||||||| ||||||| | ||||| ||| ||||| ||| | | | | | || | | || | | | ||| | | ||||| | | | | | | || || ||| || | | | | ||| |||
TGTAGCATACCTCAATGTAGACTGTGCTGTTCAAGGGCCTGGTTTCTTTGCTGGCTCAACTCCTCAGCTAGATGATCTTCTTGTCGAGGTCATAAAACAGgtatttgaag-taattatacgtgcatatgtgaatctgcatttggatattgttttaaatatagttgatcctgatatttaat---taatgctttgaataattttttacgtg---tttatttcag
upper sequence: Vv08s0032g00670.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA19G39080.1 (Glycine max), 5'ss of exon 3
TGTAGCATACCTTAATGTAGACTGTGCAGTTCAAGGACCAGGCTTCTTTGCTGGTGCAACGCCTCAGCTAGATAATCTTCTCATTGAGGTTGCAAAGAAGgtagaaaaa-gatggcaaaataagttcacaagat---tgttaatgttc-----aatctatttggatctgaat-tgatgacaacacctggtatttca--aactgtgtctaa-attgtgatttaaactgaattccag
|||||||||||||||||| |||||||| || ||||| || || ||||||| |||| |||| ||||||||||| | |||| | ||||||| |||| |||||| | || || | ||| | || || | || || | | || | | | | || | ||| || ||||||| |||| || | || | | | | ||| | |||| |||
TGTAGCATACCTTAATGTGGACTGTGCTGTGCAAGGTCCTGGTTTCTTTGTTGGTTCAACTCCTCAGCTAGACAGTCTTATTCTTGAGGTCACAAAAAAGgtatttagttgaaggtataatcatttataaatacatgtgcaaacatacgtatggataattcttaacatatatatcatgcttactcctggtaattcagtaattctgaacatcaatcagcttttgctttaatttcag
upper sequence: Vv08s0032g00670.t01 (Vitis vinifera), 5'ss of exon 3
lower sequence: GLYMA03G36430.1 (Glycine max), 5'ss of exon 3
TGTAGCATACCTTAATGTAGACTGTGCAGTTCAAGGACCAGGCTTCTTTGCTGGTGCAACGCCTCAGCTAGATAATCTTCTCATTGAGGTTGCAAAGAAGgtagaaaaagatggcaaaataagttcacaagattgttaatgttca-atctatttggatctgaattgatgacaacacctggtatttcaaactgtgtctaaattgt---gatttaaactgaattccag
|||||||||||||||||| |||||||| || ||||| || | ||||||| |||| |||| ||||||||||| |||||| | ||||||| |||| |||||| | | ||| || || | | | || | || || || ||||| || ||| | ||| ||| ||| | | | || | | ||| | | |||| |||
TGTAGCATACCTTAATGTGGACTGTGCTGTGCAAGGTCCTGATTTCTTTGTTGGTTCAACTCCTCAGCTAGACAATCTTATTCTTGAGGTCACAAACAAGgtattta--gttggaaatattatcatttataaatgcatgtagacacatacatatggataattatc-atgcttgctcctagtaattcggtaactctgaacatcgaccagcttttactttaatttcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|110377414|gb|EC942476.1|EC942476EST: CTGGTGCAACGCCTCAGCTAGATAATCTTCTCATTGAGGTTGCAAAGAAG GTCCAGGATCCTGACTCAGAGAGCATGACCATATATGATAACTGGATGATT
genomic: CTGGTGCAACGCCTCAGCTAGATAATCTTCTCATTGAGGTTGCAAAGAAGgtagaaaaag ... tgaattccagGTCCAGGATCCTGACTCAGAGAGCATGACCATATATGATAACTGGATGATT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGTAGCATACCTTAATGTAGACTGTGCAGTTCAAGGACCAGGCTTCTTTGCTGGTGCAACGCCTCAGCTAGATAATCTTCTCATTGAGGTTGCAAAGAAGgtagaaaaagatggcaaaataagttcacaagattgttaatgttcaatctatttggatctgaattgatgacaacacctggtatttcaaactgtgtctaaattgtgatttaaactgaattccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG